Literature DB >> 19066448

Chromatin reassembly signals the end of DNA repair.

Chin-Chuan Chen1, Jessica Tyler.   

Abstract

The packaging of the eukaryotic genome into chromatin provides a formidable obstacle to the machinery that mediates genomic processes such as transcription, repair and replication. The cell solves this accessibility problem during double-strand DNA repair by removing the histone proteins flanking the DNA lesion. Presumably then, the repaired DNA is subsequently reassembled into chromatin in order to allow the epigenetic information to be restored and to repackage and protect the genome. Our recent work has shown that chromatin is indeed reassembled following double-strand break repair in budding yeast. Furthermore, the assembly of the repaired DNA into chromatin is driven by acetylation within the globular domain of histone H3, on lysine 56 (H3 K56Ac). Unexpectedly, we also discovered that H3 K56Ac and chromatin assembly onto the repaired DNA is essential to turn off the DNA damage cell cycle checkpoint. This work demonstrates that reformation of the chromatin structure, not DNA repair per se, is the elusive signal that tells the cell when DNA repair is complete.

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Year:  2008        PMID: 19066448      PMCID: PMC5842806          DOI: 10.4161/cc.7.24.7188

Source DB:  PubMed          Journal:  Cell Cycle        ISSN: 1551-4005            Impact factor:   4.534


  36 in total

1.  Choreography of the DNA damage response: spatiotemporal relationships among checkpoint and repair proteins.

Authors:  Michael Lisby; Jacqueline H Barlow; Rebecca C Burgess; Rodney Rothstein
Journal:  Cell       Date:  2004-09-17       Impact factor: 41.582

2.  Chromatin remodelling at a DNA double-strand break site in Saccharomyces cerevisiae.

Authors:  Toyoko Tsukuda; Alastair B Fleming; Jac A Nickoloff; Mary Ann Osley
Journal:  Nature       Date:  2005-11-17       Impact factor: 49.962

3.  A phosphatase complex that dephosphorylates gammaH2AX regulates DNA damage checkpoint recovery.

Authors:  Michael-Christopher Keogh; Jung-Ae Kim; Michael Downey; Jeffrey Fillingham; Dipanjan Chowdhury; Jacob C Harrison; Megumi Onishi; Nira Datta; Sarah Galicia; Andrew Emili; Judy Lieberman; Xuetong Shen; Stephen Buratowski; James E Haber; Daniel Durocher; Jack F Greenblatt; Nevan J Krogan
Journal:  Nature       Date:  2005-11-20       Impact factor: 49.962

4.  Histone H3-K56 acetylation is catalyzed by histone chaperone-dependent complexes.

Authors:  Toshiaki Tsubota; Christopher E Berndsen; Judith A Erkmann; Corey L Smith; Lanhao Yang; Michael A Freitas; John M Denu; Paul D Kaufman
Journal:  Mol Cell       Date:  2007-02-22       Impact factor: 17.970

5.  Histone chaperone Asf1 is required for histone H3 lysine 56 acetylation, a modification associated with S phase in mitosis and meiosis.

Authors:  J Recht; T Tsubota; J C Tanny; R L Diaz; J M Berger; X Zhang; B A Garcia; J Shabanowitz; A L Burlingame; D F Hunt; P D Kaufman; C D Allis
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-20       Impact factor: 11.205

6.  Histone H3 K56 hyperacetylation perturbs replisomes and causes DNA damage.

Authors:  Ivana Celic; Alain Verreault; Jef D Boeke
Journal:  Genetics       Date:  2008-06-24       Impact factor: 4.562

7.  Crystal structure of the nucleosome core particle at 2.8 A resolution.

Authors:  K Luger; A W Mäder; R K Richmond; D F Sargent; T J Richmond
Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

8.  Yeast histone 2A serine 129 is essential for the efficient repair of checkpoint-blind DNA damage.

Authors:  Christophe Redon; Duane R Pilch; Emmy P Rogakou; Ann H Orr; Noel F Lowndes; William M Bonner
Journal:  EMBO Rep       Date:  2003-07       Impact factor: 8.807

9.  Rad53 regulates replication fork restart after DNA damage in Saccharomyces cerevisiae.

Authors:  Shawn J Szyjka; Jennifer G Aparicio; Christopher J Viggiani; Simon Knott; Weihong Xu; Simon Tavaré; Oscar M Aparicio
Journal:  Genes Dev       Date:  2008-07-15       Impact factor: 11.361

10.  Recovery from checkpoint-mediated arrest after repair of a double-strand break requires Srs2 helicase.

Authors:  Moreshwar B Vaze; Achille Pellicioli; Sang Eun Lee; Grzegorz Ira; Giordano Liberi; Ayelet Arbel-Eden; Marco Foiani; James E Haber
Journal:  Mol Cell       Date:  2002-08       Impact factor: 17.970

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  24 in total

Review 1.  Virion factors that target Daxx to overcome intrinsic immunity.

Authors:  Sabrina Schreiner; Harald Wodrich
Journal:  J Virol       Date:  2013-07-17       Impact factor: 5.103

Review 2.  Histone acetyltransferase 1: more than just an enzyme?

Authors:  Mark R Parthun
Journal:  Biochim Biophys Acta       Date:  2011-07-18

3.  Mass spectrometric identification of novel lysine acetylation sites in huntingtin.

Authors:  Xin Cong; Jason M Held; Francesco DeGiacomo; Akilah Bonner; Jan Marie Chen; Birgit Schilling; Gregg A Czerwieniec; Bradford W Gibson; Lisa M Ellerby
Journal:  Mol Cell Proteomics       Date:  2011-06-18       Impact factor: 5.911

4.  Histone acetyltransferase 1: More than just an enzyme?

Authors:  Mark R Parthun
Journal:  Biochim Biophys Acta       Date:  2011-07-18

Review 5.  Regulating DNA replication in plants.

Authors:  Maria de la Paz Sanchez; Celina Costas; Joana Sequeira-Mendes; Crisanto Gutierrez
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-12-01       Impact factor: 10.005

6.  The Saccharomyces cerevisiae anaphase-promoting complex interacts with multiple histone-modifying enzymes to regulate cell cycle progression.

Authors:  Emma L Turner; Mackenzie E Malo; Marnie G Pisclevich; Megan D Dash; Gerald F Davies; Terra G Arnason; Troy A A Harkness
Journal:  Eukaryot Cell       Date:  2010-08-13

Review 7.  Histone modifications and DNA double-strand break repair after exposure to ionizing radiations.

Authors:  Clayton R Hunt; Deepti Ramnarain; Nobuo Horikoshi; Puneeth Iyengar; Raj K Pandita; Jerry W Shay; Tej K Pandita
Journal:  Radiat Res       Date:  2013-02-01       Impact factor: 2.841

8.  Sites of acetylation on newly synthesized histone H4 are required for chromatin assembly and DNA damage response signaling.

Authors:  Zhongqi Ge; Devi Nair; Xiaoyan Guan; Neha Rastogi; Michael A Freitas; Mark R Parthun
Journal:  Mol Cell Biol       Date:  2013-06-17       Impact factor: 4.272

9.  Spermidinyl-CoA-based HAT inhibitors block DNA repair and provide cancer-specific chemo- and radiosensitization.

Authors:  Keya Bandyopadhyay; Jean-Louis Banères; Aimée Martin; Casimir Blonski; Joseph Parello; Ruth A Gjerset
Journal:  Cell Cycle       Date:  2009-09-02       Impact factor: 4.534

10.  Alterations in histone acetylation following exposure to 60Co γ-rays and their relationship with chromosome damage in human lymphoblastoid cells.

Authors:  Xue-Lei Tian; Xue Lu; Jiang-Bin Feng; Tian-Jing Cai; Shuang Li; Mei Tian; Qing-Jie Liu
Journal:  Radiat Environ Biophys       Date:  2018-05-17       Impact factor: 1.925

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