Literature DB >> 23209151

Regulating DNA replication in plants.

Maria de la Paz Sanchez1, Celina Costas, Joana Sequeira-Mendes, Crisanto Gutierrez.   

Abstract

Chromosomal DNA replication in plants has requirements and constraints similar to those in other eukaryotes. However, some aspects are plant-specific. Studies of DNA replication control in plants, which have unique developmental strategies, can offer unparalleled opportunities of comparing regulatory processes with yeast and, particularly, metazoa to identify common trends and basic rules. In addition to the comparative molecular and biochemical studies, genomic studies in plants that started with Arabidopsis thaliana in the year 2000 have now expanded to several dozens of species. This, together with the applicability of genomic approaches and the availability of a large collection of mutants, underscores the enormous potential to study DNA replication control in a whole developing organism. Recent advances in this field with particular focus on the DNA replication proteins, the nature of replication origins and their epigenetic landscape, and the control of endoreplication will be reviewed.

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Year:  2012        PMID: 23209151      PMCID: PMC3504439          DOI: 10.1101/cshperspect.a010140

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  173 in total

1.  Mcm10 plays an essential role in origin DNA unwinding after loading of the CMG components.

Authors:  Mai Kanke; Yukako Kodama; Tatsuro S Takahashi; Takuro Nakagawa; Hisao Masukata
Journal:  EMBO J       Date:  2012-03-20       Impact factor: 11.598

2.  Mcm8 and Mcm9 form a complex that functions in homologous recombination repair induced by DNA interstrand crosslinks.

Authors:  Kohei Nishimura; Masamichi Ishiai; Kazuki Horikawa; Tatsuo Fukagawa; Minoru Takata; Haruhiko Takisawa; Masato T Kanemaki
Journal:  Mol Cell       Date:  2012-07-05       Impact factor: 17.970

Review 3.  Heterochromatin proteins and the control of heterochromatic gene silencing in Arabidopsis.

Authors:  Andreas Fischer; Ingo Hofmann; Kathrin Naumann; Gunter Reuter
Journal:  J Plant Physiol       Date:  2005-12-27       Impact factor: 3.549

4.  DNA topoisomerase VI is essential for endoreduplication in Arabidopsis.

Authors:  Keiko Sugimoto-Shirasu; Nicola J Stacey; Julia Corsar; Keith Roberts; Maureen C McCann
Journal:  Curr Biol       Date:  2002-10-15       Impact factor: 10.834

5.  The cyclin-dependent kinase inhibitor KRP2 controls the onset of the endoreduplication cycle during Arabidopsis leaf development through inhibition of mitotic CDKA;1 kinase complexes.

Authors:  Aurine Verkest; Carmem-Lara de O Manes; Steven Vercruysse; Sara Maes; Els Van Der Schueren; Tom Beeckman; Pascal Genschik; Martin Kuiper; Dirk Inzé; Lieven De Veylder
Journal:  Plant Cell       Date:  2005-04-29       Impact factor: 11.277

6.  The mitotic inhibitor ccs52 is required for endoreduplication and ploidy-dependent cell enlargement in plants.

Authors:  A Cebolla; J M Vinardell; E Kiss; B Oláh; F Roudier; A Kondorosi; E Kondorosi
Journal:  EMBO J       Date:  1999-08-16       Impact factor: 11.598

7.  A NAC domain protein interacts with tomato leaf curl virus replication accessory protein and enhances viral replication.

Authors:  Luke A Selth; Satish C Dogra; M Saif Rasheed; Helen Healy; John W Randles; M Ali Rezaian
Journal:  Plant Cell       Date:  2004-12-17       Impact factor: 11.277

8.  Gene for proliferating-cell nuclear antigen (DNA polymerase delta auxiliary protein) is present in both mammalian and higher plant genomes.

Authors:  I Suzuka; H Daidoji; M Matsuoka; K Kadowaki; Y Takasaki; P K Nakane; T Moriuchi
Journal:  Proc Natl Acad Sci U S A       Date:  1989-05       Impact factor: 11.205

9.  Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.

Authors:  José Trinidad Ascencio-Ibáñez; Rosangela Sozzani; Tae-Jin Lee; Tzu-Ming Chu; Russell D Wolfinger; Rino Cella; Linda Hanley-Bowdoin
Journal:  Plant Physiol       Date:  2008-07-23       Impact factor: 8.340

10.  The genes encoding Arabidopsis ORC subunits are E2F targets and the two ORC1 genes are differently expressed in proliferating and endoreplicating cells.

Authors:  Sara Diaz-Trivino; María del Mar Castellano; María de la Paz Sanchez; Elena Ramirez-Parra; Bénédicte Desvoyes; Crisanto Gutierrez
Journal:  Nucleic Acids Res       Date:  2005-09-22       Impact factor: 16.971

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  9 in total

Review 1.  Endoreplication.

Authors:  Norman Zielke; Bruce A Edgar; Melvin L DePamphilis
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-01-01       Impact factor: 10.005

Review 2.  Rescuing stalled or damaged replication forks.

Authors:  Joseph T P Yeeles; Jérôme Poli; Kenneth J Marians; Philippe Pasero
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-05-01       Impact factor: 10.005

3.  The MADS-box XAANTAL1 increases proliferation at the Arabidopsis root stem-cell niche and participates in transition to differentiation by regulating cell-cycle components.

Authors:  Karla V García-Cruz; Berenice García-Ponce; Adriana Garay-Arroyo; María De La Paz Sanchez; Yamel Ugartechea-Chirino; Bénédicte Desvoyes; Mario A Pacheco-Escobedo; Rosalinda Tapia-López; Ivan Ransom-Rodríguez; Crisanto Gutierrez; Elena R Alvarez-Buylla
Journal:  Ann Bot       Date:  2016-10-01       Impact factor: 4.357

Review 4.  Looking at plant cell cycle from the chromatin window.

Authors:  Bénédicte Desvoyes; María Fernández-Marcos; Joana Sequeira-Mendes; Sofía Otero; Zaida Vergara; Crisanto Gutierrez
Journal:  Front Plant Sci       Date:  2014-07-25       Impact factor: 5.753

5.  Retrotransposons are specified as DNA replication origins in the gene-poor regions of Arabidopsis heterochromatin.

Authors:  Zaida Vergara; Joana Sequeira-Mendes; Jordi Morata; Ramón Peiró; Elizabeth Hénaff; Celina Costas; Josep M Casacuberta; Crisanto Gutierrez
Journal:  Nucleic Acids Res       Date:  2017-08-21       Impact factor: 16.971

6.  Differences in firing efficiency, chromatin, and transcription underlie the developmental plasticity of the Arabidopsis DNA replication origins.

Authors:  Joana Sequeira-Mendes; Zaida Vergara; Ramon Peiró; Jordi Morata; Irene Aragüez; Celina Costas; Raul Mendez-Giraldez; Josep M Casacuberta; Ugo Bastolla; Crisanto Gutierrez
Journal:  Genome Res       Date:  2019-03-07       Impact factor: 9.043

Review 7.  Plant DNA Polymerases.

Authors:  Jose-Antonio Pedroza-Garcia; Lieven De Veylder; Cécile Raynaud
Journal:  Int J Mol Sci       Date:  2019-09-27       Impact factor: 5.923

8.  Comparative Transcriptome Analysis Reveals Key Genes and Pathways Involved in Prickle Development in Eggplant.

Authors:  Lei Zhang; Haoyun Sun; Tao Xu; Tianye Shi; Zongyun Li; Wenqian Hou
Journal:  Genes (Basel)       Date:  2021-02-25       Impact factor: 4.096

Review 9.  A Journey to the Core of the Plant Cell Cycle.

Authors:  Crisanto Gutierrez
Journal:  Int J Mol Sci       Date:  2022-07-24       Impact factor: 6.208

  9 in total

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