Literature DB >> 19065136

Genotype-phenotype databases: challenges and solutions for the post-genomic era.

Gudmundur A Thorisson1, Juha Muilu, Anthony J Brookes.   

Abstract

The flow of research data concerning the genetic basis of health and disease is rapidly increasing in speed and complexity. In response, many projects are seeking to ensure that there are appropriate informatics tools, systems and databases available to manage and exploit this flood of information. Previous solutions, such as central databases, journal-based publication and manually intensive data curation, are now being enhanced with new systems for federated databases, database publication, and more automated management of data flows and quality control. Along with emerging technologies that enhance connectivity and data retrieval, these advances should help to create a powerful knowledge environment for genotype-phenotype information.

Mesh:

Year:  2009        PMID: 19065136     DOI: 10.1038/nrg2483

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  51 in total

1.  DDBJ in the stream of various biological data.

Authors:  S Miyazaki; H Sugawara; K Ikeo; T Gojobori; Y Tateno
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

2.  Databases in peril.

Authors:  Zeeya Merali; Jim Giles
Journal:  Nature       Date:  2005-06-23       Impact factor: 49.962

3.  PharmGKB: a logical home for knowledge relating genotype to drug response phenotype.

Authors:  Russ B Altman
Journal:  Nat Genet       Date:  2007-04       Impact factor: 38.330

4.  Systematic meta-analyses and field synopsis of genetic association studies in schizophrenia: the SzGene database.

Authors:  Nicole C Allen; Sachin Bagade; Matthew B McQueen; John P A Ioannidis; Fotini K Kavvoura; Muin J Khoury; Rudolph E Tanzi; Lars Bertram
Journal:  Nat Genet       Date:  2008-07       Impact factor: 38.330

5.  Genetic information: Special or not? Responses from focus groups with members of a health maintenance organization.

Authors:  Brenda Diergaarde; Deborah J Bowen; Evette J Ludman; Julie O Culver; Nancy Press; Wylie Burke
Journal:  Am J Med Genet A       Date:  2007-03-15       Impact factor: 2.802

6.  The emergence of an ethical duty to disclose genetic research results: international perspectives.

Authors:  Bartha Maria Knoppers; Yann Joly; Jacques Simard; Francine Durocher
Journal:  Eur J Hum Genet       Date:  2006-07-26       Impact factor: 4.246

7.  Patient autonomy and relatives' right to know genetic information.

Authors:  Roy Gilbar
Journal:  Med Law       Date:  2007-12

8.  Trends in ethical and legal frameworks for the use of human biobanks.

Authors:  A Cambon-Thomsen; E Rial-Sebbag; B M Knoppers
Journal:  Eur Respir J       Date:  2007-08       Impact factor: 16.671

9.  Standardizing the standards.

Authors:  John Quackenbush
Journal:  Mol Syst Biol       Date:  2006-02-21       Impact factor: 11.429

10.  Design and implementation of microarray gene expression markup language (MAGE-ML).

Authors:  Paul T Spellman; Michael Miller; Jason Stewart; Charles Troup; Ugis Sarkans; Steve Chervitz; Derek Bernhart; Gavin Sherlock; Catherine Ball; Marc Lepage; Marcin Swiatek; W L Marks; Jason Goncalves; Scott Markel; Daniel Iordan; Mohammadreza Shojatalab; Angel Pizarro; Joe White; Robert Hubley; Eric Deutsch; Martin Senger; Bruce J Aronow; Alan Robinson; Doug Bassett; Christian J Stoeckert; Alvis Brazma
Journal:  Genome Biol       Date:  2002-08-23       Impact factor: 13.583

View more
  34 in total

1.  Using PhenX measures to identify opportunities for cross-study analysis.

Authors:  Huaqin Pan; Kimberly A Tryka; Daniel J Vreeman; Wayne Huggins; Michael J Phillips; Jayashri P Mehta; Jacqueline H Phillips; Clement J McDonald; Heather A Junkins; Erin M Ramos; Carol M Hamilton
Journal:  Hum Mutat       Date:  2012-04-03       Impact factor: 4.878

Review 2.  Molecular diagnostics in transplantation.

Authors:  Maarten Naesens; Minnie M Sarwal
Journal:  Nat Rev Nephrol       Date:  2010-08-24       Impact factor: 28.314

3.  A literature search tool for intelligent extraction of disease-associated genes.

Authors:  Jae-Yoon Jung; Todd F DeLuca; Tristan H Nelson; Dennis P Wall
Journal:  J Am Med Inform Assoc       Date:  2013-09-02       Impact factor: 4.497

Review 4.  Selection and mutation in the "new" genetics: an emerging hypothesis.

Authors:  Bruce Gottlieb; Lenore K Beitel; Carlos Alvarado; Mark A Trifiro
Journal:  Hum Genet       Date:  2010-01-23       Impact factor: 4.132

Review 5.  Applying mass spectrometry-based proteomics to genetics, genomics and network biology.

Authors:  Matthias Gstaiger; Ruedi Aebersold
Journal:  Nat Rev Genet       Date:  2009-09       Impact factor: 53.242

Review 6.  Closure of population biobanks and direct-to-consumer genetic testing companies.

Authors:  Ma'n H Zawati; Pascal Borry; Heidi Carmen Howard
Journal:  Hum Genet       Date:  2011-06-26       Impact factor: 4.132

Review 7.  Using electronic health records to drive discovery in disease genomics.

Authors:  Isaac S Kohane
Journal:  Nat Rev Genet       Date:  2011-05-18       Impact factor: 53.242

Review 8.  Computational tools for comparative phenomics: the role and promise of ontologies.

Authors:  Georgios V Gkoutos; Paul N Schofield; Robert Hoehndorf
Journal:  Mamm Genome       Date:  2012-07-20       Impact factor: 2.957

9.  SPOT: a web-based tool for using biological databases to prioritize SNPs after a genome-wide association study.

Authors:  Scott F Saccone; Raphael Bolze; Prasanth Thomas; Jiaxi Quan; Gaurang Mehta; Ewa Deelman; Jay A Tischfield; John P Rice
Journal:  Nucleic Acids Res       Date:  2010-06-06       Impact factor: 16.971

10.  Quality, quantity and harmony: the DataSHaPER approach to integrating data across bioclinical studies.

Authors:  Isabel Fortier; Paul R Burton; Paula J Robson; Vincent Ferretti; Julian Little; Francois L'Heureux; Mylène Deschênes; Bartha M Knoppers; Dany Doiron; Joost C Keers; Pamela Linksted; Jennifer R Harris; Geneviève Lachance; Catherine Boileau; Nancy L Pedersen; Carol M Hamilton; Kristian Hveem; Marilyn J Borugian; Richard P Gallagher; John McLaughlin; Louise Parker; John D Potter; John Gallacher; Rudolf Kaaks; Bette Liu; Tim Sprosen; Anne Vilain; Susan A Atkinson; Andrea Rengifo; Robin Morton; Andres Metspalu; H Erich Wichmann; Mark Tremblay; Rex L Chisholm; Andrés Garcia-Montero; Hans Hillege; Jan-Eric Litton; Lyle J Palmer; Markus Perola; Bruce H R Wolffenbuttel; Leena Peltonen; Thomas J Hudson
Journal:  Int J Epidemiol       Date:  2010-09-02       Impact factor: 7.196

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.