Literature DB >> 19064911

Expanding metabolism for biosynthesis of nonnatural alcohols.

Kechun Zhang1, Michael R Sawaya, David S Eisenberg, James C Liao.   

Abstract

Nature uses a limited set of metabolites to perform all of the biochemical reactions. To increase the metabolic capabilities of biological systems, we have expanded the natural metabolic network, using a nonnatural metabolic engineering approach. The branched-chain amino acid pathways are extended to produce abiotic longer chain keto acids and alcohols by engineering the chain elongation activity of 2-isopropylmalate synthase and altering the substrate specificity of downstream enzymes through rational protein design. When introduced into Escherichia coli, this nonnatural biosynthetic pathway produces various long-chain alcohols with carbon number ranging from 5 to 8. In particular, we demonstrate the feasibility of this approach by optimizing the biosynthesis of the 6-carbon alcohol, (S)-3-methyl-1-pentanol. This work demonstrates an approach to build artificial metabolism beyond the natural metabolic network. Nonnatural metabolites such as long chain alcohols are now included in the metabolite family of living systems.

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Year:  2008        PMID: 19064911      PMCID: PMC2634914          DOI: 10.1073/pnas.0807157106

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  24 in total

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2.  A synthetic oscillatory network of transcriptional regulators.

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Review 3.  Combinatorial and computational challenges for biocatalyst design.

Authors:  F H Arnold
Journal:  Nature       Date:  2001-01-11       Impact factor: 49.962

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Authors:  Nayden Koon; Christopher J Squire; Edward N Baker
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-24       Impact factor: 11.205

5.  Expanding the genetic code of Escherichia coli.

Authors:  L Wang; A Brock; B Herberich; P G Schultz
Journal:  Science       Date:  2001-04-20       Impact factor: 47.728

6.  Properties and functional significance of Saccharomyces cerevisiae ADHVI.

Authors:  Carol Larroy; M Rosario Fernández; Eva González; Xavier Parés; Josep A Biosca
Journal:  Chem Biol Interact       Date:  2003-02-01       Impact factor: 5.192

7.  An efficient and general route to reduced polypropionates via Zr-catalyzed asymmetric CC bond formation.

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Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-08       Impact factor: 11.205

8.  Complete chemical synthesis, assembly, and cloning of a Mycoplasma genitalium genome.

Authors:  Daniel G Gibson; Gwynedd A Benders; Cynthia Andrews-Pfannkoch; Evgeniya A Denisova; Holly Baden-Tillson; Jayshree Zaveri; Timothy B Stockwell; Anushka Brownley; David W Thomas; Mikkel A Algire; Chuck Merryman; Lei Young; Vladimir N Noskov; John I Glass; J Craig Venter; Clyde A Hutchison; Hamilton O Smith
Journal:  Science       Date:  2008-01-24       Impact factor: 47.728

9.  Engineering the metabolism of Escherichia coli W3110 for the conversion of sugar to redox-neutral and oxidized products: homoacetate production.

Authors:  T B Causey; S Zhou; K T Shanmugam; L O Ingram
Journal:  Proc Natl Acad Sci U S A       Date:  2003-01-29       Impact factor: 11.205

10.  Crystal structure of thiamindiphosphate-dependent indolepyruvate decarboxylase from Enterobacter cloacae, an enzyme involved in the biosynthesis of the plant hormone indole-3-acetic acid.

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Journal:  Eur J Biochem       Date:  2003-05
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  80 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-02       Impact factor: 11.205

2.  Metabolic engineering of bacteria.

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Journal:  Indian J Microbiol       Date:  2011-03-30       Impact factor: 2.461

3.  Engineered reversal of the β-oxidation cycle for the synthesis of fuels and chemicals.

Authors:  Clementina Dellomonaco; James M Clomburg; Elliot N Miller; Ramon Gonzalez
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4.  Bacterial synthesis of C3-C5 diols via extending amino acid catabolism.

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Journal:  Proc Natl Acad Sci U S A       Date:  2020-07-27       Impact factor: 11.205

5.  Expanding metabolism for total biosynthesis of the nonnatural amino acid L-homoalanine.

Authors:  Kechun Zhang; Han Li; Kwang Myung Cho; James C Liao
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-23       Impact factor: 11.205

6.  L-malate production by metabolically engineered Escherichia coli.

Authors:  X Zhang; X Wang; K T Shanmugam; L O Ingram
Journal:  Appl Environ Microbiol       Date:  2010-11-19       Impact factor: 4.792

7.  Expanding the repertoire of biofuel alternatives through metabolic pathway evolution.

Authors:  Mattheos A G Koffas
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-21       Impact factor: 11.205

Review 8.  Engineering synthetic recursive pathways to generate non-natural small molecules.

Authors:  Elizabeth A Felnagle; Asha Chaubey; Elizabeth L Noey; Kendall N Houk; James C Liao
Journal:  Nat Chem Biol       Date:  2012-05-17       Impact factor: 15.040

Review 9.  Protein engineering for metabolic engineering: current and next-generation tools.

Authors:  Ryan J Marcheschi; Luisa S Gronenberg; James C Liao
Journal:  Biotechnol J       Date:  2013-04-16       Impact factor: 4.677

10.  One-step fermentative production of poly(lactate-co-glycolate) from carbohydrates in Escherichia coli.

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Journal:  Nat Biotechnol       Date:  2016-03-07       Impact factor: 54.908

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