Literature DB >> 11196654

Combinatorial and computational challenges for biocatalyst design.

F H Arnold1.   

Abstract

Nature provides a fantastic array of catalysts extremely well suited to supporting life, but usually not so well suited for technology. Whether biocatalysis will have a significant technological impact depends on our finding robust routes for tailoring nature's catalysts or redesigning them anew. Laboratory evolution methods are now used widely to fine-tune the selectivity and activity of enzymes. The current rapid development of these combinatorial methods promises solutions to more complex problems, including the creation of new biosynthetic pathways. Computational methods are also developing quickly. The marriage of these approaches will allow us to generate the efficient, effective catalysts needed by the pharmaceutical, food and chemicals industries and should open up new opportunities for producing energy and chemicals from renewable resources.

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Year:  2001        PMID: 11196654     DOI: 10.1038/35051731

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  65 in total

Review 1.  Breaking open a protein barrel.

Authors:  N Kallenbach
Journal:  Proc Natl Acad Sci U S A       Date:  2001-03-13       Impact factor: 11.205

2.  Mimicking natural evolution in vitro: an N-acetylneuraminate lyase mutant with an increased dihydrodipicolinate synthase activity.

Authors:  Andreas C Joerger; Sebastian Mayer; Alan R Fersht
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-23       Impact factor: 11.205

3.  Chemical complementation: a reaction-independent genetic assay for enzyme catalysis.

Authors:  Kathleen Baker; Colleen Bleczinski; Hening Lin; Gilda Salazar-Jimenez; Debleena Sengupta; Sonja Krane; Virginia W Cornish
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-13       Impact factor: 11.205

4.  Combining computational and experimental screening for rapid optimization of protein properties.

Authors:  Robert J Hayes; Jorg Bentzien; Marie L Ary; Marian Y Hwang; Jonathan M Jacinto; Jöst Vielmetter; Anirban Kundu; Bassil I Dahiyat
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-21       Impact factor: 11.205

5.  Library analysis of SCHEMA-guided protein recombination.

Authors:  Michelle M Meyer; Jonathan J Silberg; Christopher A Voigt; Jeffrey B Endelman; Stephen L Mayo; Zhen-Gang Wang; Frances H Arnold
Journal:  Protein Sci       Date:  2003-08       Impact factor: 6.725

6.  Controlling the enantioselectivity of enzymes by directed evolution: practical and theoretical ramifications.

Authors:  Manfred T Reetz
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-12       Impact factor: 11.205

Review 7.  Engineered proteins: redox properties and their applications.

Authors:  Shradha Prabhulkar; Hui Tian; Xiaotang Wang; Jun-Jie Zhu; Chen-Zhong Li
Journal:  Antioxid Redox Signal       Date:  2012-06-11       Impact factor: 8.401

8.  Protein thermostability calculations using alchemical free energy simulations.

Authors:  Daniel Seeliger; Bert L de Groot
Journal:  Biophys J       Date:  2010-05-19       Impact factor: 4.033

9.  Experimental library screening demonstrates the successful application of computational protein design to large structural ensembles.

Authors:  Benjamin D Allen; Alex Nisthal; Stephen L Mayo
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-02       Impact factor: 11.205

10.  De novo designed cyclic-peptide heme complexes.

Authors:  Michael M Rosenblatt; Jiangyun Wang; Kenneth S Suslick
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-31       Impact factor: 11.205

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