Literature DB >> 19064641

An oligomerized 53BP1 tudor domain suffices for recognition of DNA double-strand breaks.

Omar Zgheib1, Kristopher Pataky, Juergen Brugger, Thanos D Halazonetis.   

Abstract

53BP1, the vertebrate ortholog of the budding yeast Rad9 and fission yeast Crb2/Rhp9 checkpoint proteins, is recruited rapidly to sites of DNA double-strand breaks (DSBs). A tandem tudor domain in human 53BP1 that recognizes methylated residues in the histone core is necessary, but not sufficient, for efficient recruitment. By analysis of deletion mutants, we identify here additional elements in 53BP1 that facilitate recognition of DNA DSBs. The first element corresponds to an independently folding oligomerization domain. Replacement of this domain with heterologous tetramerization domains preserves the ability of 53BP1 to recognize DNA DSBs. A second element is only about 15 amino acids long and appears to be a C-terminal extension of the tudor domain, rather than an independently functioning domain. Recruitment of 53BP1 to sites of DNA DSBs is facilitated by histone H2AX phosphorylation and ubiquitination. However, none of the 53BP1 domains/elements important for recruitment are known to bind phosphopeptides or ubiquitin, suggesting that histone phosphorylation and ubiquitination regulate 53BP1 recruitment to sites of DNA DSBs indirectly.

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Year:  2008        PMID: 19064641      PMCID: PMC2643802          DOI: 10.1128/MCB.01011-08

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  46 in total

1.  53BP1 exchanges slowly at the sites of DNA damage and appears to require RNA for its association with chromatin.

Authors:  Fiona Pryde; Shirin Khalili; Kathryn Robertson; Jim Selfridge; Ann-Marie Ritchie; David W Melton; Denis Jullien; Yasuhisa Adachi
Journal:  J Cell Sci       Date:  2005-04-19       Impact factor: 5.285

2.  MDC1 directly binds phosphorylated histone H2AX to regulate cellular responses to DNA double-strand breaks.

Authors:  Manuel Stucki; Julie A Clapperton; Duaa Mohammad; Michael B Yaffe; Stephen J Smerdon; Stephen P Jackson
Journal:  Cell       Date:  2005-12-29       Impact factor: 41.582

3.  X-ray structure of the GCN4 leucine zipper, a two-stranded, parallel coiled coil.

Authors:  E K O'Shea; J D Klemm; P S Kim; T Alber
Journal:  Science       Date:  1991-10-25       Impact factor: 47.728

4.  Dynamic assembly and sustained retention of 53BP1 at the sites of DNA damage are controlled by Mdc1/NFBD1.

Authors:  Simon Bekker-Jensen; Claudia Lukas; Fredrik Melander; Jiri Bartek; Jiri Lukas
Journal:  J Cell Biol       Date:  2005-07-11       Impact factor: 10.539

5.  Structural basis for the methylation state-specific recognition of histone H4-K20 by 53BP1 and Crb2 in DNA repair.

Authors:  Maria Victoria Botuyan; Joseph Lee; Irene M Ward; Ja-Eun Kim; James R Thompson; Junjie Chen; Georges Mer
Journal:  Cell       Date:  2006-12-29       Impact factor: 41.582

6.  The BRCT domain of the S. cerevisiae checkpoint protein Rad9 mediates a Rad9-Rad9 interaction after DNA damage.

Authors:  J Soulier; N F Lowndes
Journal:  Curr Biol       Date:  1999-05-20       Impact factor: 10.834

7.  Boundaries and physical characterization of a new domain shared between mammalian 53BP1 and yeast Rad9 checkpoint proteins.

Authors:  Béatrice Alpha-Bazin; Alain Lorphelin; Nathalie Nozerand; Gaëlle Charier; Charles Marchetti; Frédéric Bérenguer; Joël Couprie; Bernard Gilquin; Sophie Zinn-Justin; Eric Quéméneur
Journal:  Protein Sci       Date:  2005-07       Impact factor: 6.725

8.  Microcollimator for micrometer-wide stripe irradiation of cells using 20-30 keV X rays.

Authors:  Kristopher Pataky; Guillermo Villanueva; Andre Liani; Omar Zgheib; Nathan Jenkins; Demetrios J Halazonetis; Thanos D Halazonetis; Juergen Brugger
Journal:  Radiat Res       Date:  2009-08       Impact factor: 2.841

9.  RAP80 targets BRCA1 to specific ubiquitin structures at DNA damage sites.

Authors:  Bijan Sobhian; Genze Shao; Dana R Lilli; Aedín C Culhane; Lisa A Moreau; Bing Xia; David M Livingston; Roger A Greenberg
Journal:  Science       Date:  2007-05-25       Impact factor: 47.728

10.  Ubiquitin-binding protein RAP80 mediates BRCA1-dependent DNA damage response.

Authors:  Hongtae Kim; Junjie Chen; Xiaochun Yu
Journal:  Science       Date:  2007-05-25       Impact factor: 47.728

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  59 in total

1.  TopBP1 functions with 53BP1 in the G1 DNA damage checkpoint.

Authors:  Rachele Cescutti; Simona Negrini; Masaoki Kohzaki; Thanos D Halazonetis
Journal:  EMBO J       Date:  2010-09-24       Impact factor: 11.598

2.  Femtosecond near-infrared laser microirradiation reveals a crucial role for PARP signaling on factor assemblies at DNA damage sites.

Authors:  Gladys Mae Saquilabon Cruz; Xiangduo Kong; Bárbara Alcaraz Silva; Nima Khatibzadeh; Ryan Thai; Michael W Berns; Kyoko Yokomori
Journal:  Nucleic Acids Res       Date:  2015-09-30       Impact factor: 16.971

Review 3.  Push back to respond better: regulatory inhibition of the DNA double-strand break response.

Authors:  Stephanie Panier; Daniel Durocher
Journal:  Nat Rev Mol Cell Biol       Date:  2013-09-04       Impact factor: 94.444

Review 4.  Shieldin - the protector of DNA ends.

Authors:  Dheva Setiaputra; Daniel Durocher
Journal:  EMBO Rep       Date:  2019-04-04       Impact factor: 8.807

5.  Dissection of Rad9 BRCT domain function in the mitotic checkpoint response to telomere uncapping.

Authors:  Chinonye C Nnakwe; Mohammed Altaf; Jacques Côté; Stephen J Kron
Journal:  DNA Repair (Amst)       Date:  2009-10-31

6.  Ultraviolet-B-mediated induction of protein-protein interactions in mammalian cells.

Authors:  Remco P Crefcoeur; Ruohe Yin; Roman Ulm; Thanos D Halazonetis
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

Review 7.  Double-strand break repair: 53BP1 comes into focus.

Authors:  Stephanie Panier; Simon J Boulton
Journal:  Nat Rev Mol Cell Biol       Date:  2013-12-11       Impact factor: 94.444

Review 8.  Role of 53BP1 in the regulation of DNA double-strand break repair pathway choice.

Authors:  Arun Gupta; Clayton R Hunt; Sharmistha Chakraborty; Raj K Pandita; John Yordy; Deepti B Ramnarain; Nobuo Horikoshi; Tej K Pandita
Journal:  Radiat Res       Date:  2013-12-09       Impact factor: 2.841

Review 9.  53BP1: pro choice in DNA repair.

Authors:  Michal Zimmermann; Titia de Lange
Journal:  Trends Cell Biol       Date:  2013-10-04       Impact factor: 20.808

10.  Dynamics of Rad9 chromatin binding and checkpoint function are mediated by its dimerization and are cell cycle-regulated by CDK1 activity.

Authors:  Magda Granata; Federico Lazzaro; Daniele Novarina; Davide Panigada; Fabio Puddu; Carla Manuela Abreu; Ramesh Kumar; Muriel Grenon; Noel F Lowndes; Paolo Plevani; Marco Muzi-Falconi
Journal:  PLoS Genet       Date:  2010-08-05       Impact factor: 5.917

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