Literature DB >> 19053469

Structural and dynamic characterization of intrinsically disordered human securin by NMR spectroscopy.

Veronika Csizmok1, Isabella C Felli, Peter Tompa, Lucia Banci, Ivano Bertini.   

Abstract

Understanding the molecular action of securin, the inhibitor of separase in mitosis, is of immense theoretical and biomedical importance. The residue-level structural description of an intrinsically disordered protein of this length (202 amino acids, containing 24 prolines), however, represents a particular challenge. Here we combined (1)H-detected and (13)C-detected protonless NMR experiments to achieve full assignment of securin's backbone amide resonances. Chemical shifts, (15)N relaxation rates (R(1), R(2), (1)H-(15)N NOEs), (1)H exchange rates with the solvent (CLEANEX-PM), and (1)H-(15)N residual dipolar couplings were determined along the entire length of the protein. This analysis showed that securin is not entirely disordered, but segregates into a largely disordered N-terminal half and a C-terminal half with transient segmental order, within which the segment D(150)-F(159) has a significant helical tendency and segments E(113)-S(127) and W(174)-L(178) also show a significant deviation from random-coil behavior. These results, in combination with bioinformatic and biochemical data on the securin/separase interaction, shed light on the inhibitory action of securin on separase.

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Year:  2008        PMID: 19053469     DOI: 10.1021/ja805510b

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  28 in total

1.  The RelA nuclear localization signal folds upon binding to IκBα.

Authors:  Carla F Cervantes; Simon Bergqvist; Magnus Kjaergaard; Gerard Kroon; Shih-Che Sue; H Jane Dyson; Elizabeth A Komives
Journal:  J Mol Biol       Date:  2010-11-19       Impact factor: 5.469

2.  Speeding up sequence specific assignment of IDPs.

Authors:  Wolfgang Bermel; Ivano Bertini; Isabella C Felli; Leonardo Gonnelli; Wiktor Koźmiński; Alessandro Piai; Roberta Pierattelli; Jan Stanek
Journal:  J Biomol NMR       Date:  2012-06-10       Impact factor: 2.835

3.  Temperature-dependent structural changes in intrinsically disordered proteins: formation of alpha-helices or loss of polyproline II?

Authors:  Magnus Kjaergaard; Ann-Beth Nørholm; Ruth Hendus-Altenburger; Stine F Pedersen; Flemming M Poulsen; Birthe B Kragelund
Journal:  Protein Sci       Date:  2010-08       Impact factor: 6.725

4.  High-dimensionality 13C direct-detected NMR experiments for the automatic assignment of intrinsically disordered proteins.

Authors:  Wolfgang Bermel; Isabella C Felli; Leonardo Gonnelli; Wiktor Koźmiński; Alessandro Piai; Roberta Pierattelli; Anna Zawadzka-Kazimierczuk
Journal:  J Biomol NMR       Date:  2013-11-08       Impact factor: 2.835

5.  A six-dimensional alpha proton detection-based APSY experiment for backbone assignment of intrinsically disordered proteins.

Authors:  Xuejun Yao; Stefan Becker; Markus Zweckstetter
Journal:  J Biomol NMR       Date:  2014-11-04       Impact factor: 2.835

Review 6.  To be disordered or not to be disordered: is that still a question for proteins in the cell?

Authors:  Kris Pauwels; Pierre Lebrun; Peter Tompa
Journal:  Cell Mol Life Sci       Date:  2017-06-13       Impact factor: 9.261

7.  15N detection harnesses the slow relaxation property of nitrogen: Delivering enhanced resolution for intrinsically disordered proteins.

Authors:  Sandeep Chhabra; Patrick Fischer; Koh Takeuchi; Abhinav Dubey; Joshua J Ziarek; Andras Boeszoermenyi; Daniel Mathieu; Wolfgang Bermel; Norman E Davey; Gerhard Wagner; Haribabu Arthanari
Journal:  Proc Natl Acad Sci U S A       Date:  2018-02-05       Impact factor: 11.205

8.  BEST-TROSY experiments for time-efficient sequential resonance assignment of large disordered proteins.

Authors:  Zsofia Solyom; Melanie Schwarten; Leonhard Geist; Robert Konrat; Dieter Willbold; Bernhard Brutscher
Journal:  J Biomol NMR       Date:  2013-02-24       Impact factor: 2.835

9.  Measuring hydrogen exchange in proteins by selective water saturation in (1)H- (15)N SOFAST/BEST-type experiments: advantages and limitations.

Authors:  Enrico Rennella; Zsofia Solyom; Bernhard Brutscher
Journal:  J Biomol NMR       Date:  2014-08-31       Impact factor: 2.835

10.  Triple resonance ¹⁵Ν NMR relaxation experiments for studies of intrinsically disordered proteins.

Authors:  Pavel Srb; Jiří Nováček; Pavel Kadeřávek; Alžbeta Rabatinová; Libor Krásný; Jitka Žídková; Janette Bobálová; Vladimír Sklenář; Lukáš Žídek
Journal:  J Biomol NMR       Date:  2017-10-25       Impact factor: 2.835

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