Literature DB >> 25173410

Measuring hydrogen exchange in proteins by selective water saturation in (1)H- (15)N SOFAST/BEST-type experiments: advantages and limitations.

Enrico Rennella1, Zsofia Solyom, Bernhard Brutscher.   

Abstract

HET(ex)-SOFAST NMR (Schanda et al. in J Biomol NMR 33:199-211, 2006) has been proposed some years ago as a fast and sensitive method for semi-quantitative measurement of site-specific amide-water hydrogen exchange effects along the backbone of proteins. Here we extend this concept to BEST readout sequences that provide a better resolution at the expense of some loss in sensitivity. We discuss the theoretical background and implementation of the experiment, and demonstrate its performance for an intrinsically disordered protein, 2 well folded globular proteins, and a transiently populated folding intermediate state. We also provide a critical evaluation of the level of accuracy that can be obtained when extracting quantitative exchange rates from HET(ex) NMR measurements.

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Year:  2014        PMID: 25173410     DOI: 10.1007/s10858-014-9857-8

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  27 in total

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Authors:  Dmitry Shishmarev; Gottfried Otting
Journal:  J Magn Reson       Date:  2011-09-10       Impact factor: 2.229

2.  UltraSOFAST HMQC NMR and the repetitive acquisition of 2D protein spectra at Hz rates.

Authors:  Maayan Gal; Paul Schanda; Bernhard Brutscher; Lucio Frydman
Journal:  J Am Chem Soc       Date:  2007-02-07       Impact factor: 15.419

3.  Real-time NMR characterization of structure and dynamics in a transiently populated protein folding intermediate.

Authors:  Enrico Rennella; Thomas Cutuil; Paul Schanda; Isabel Ayala; Vincent Forge; Bernhard Brutscher
Journal:  J Am Chem Soc       Date:  2012-05-07       Impact factor: 15.419

4.  NMR spectroscopic studies of intrinsically disordered proteins at near-physiological conditions.

Authors:  Sergio Gil; Tomáš Hošek; Zsofia Solyom; Rainer Kümmerle; Bernhard Brutscher; Roberta Pierattelli; Isabella C Felli
Journal:  Angew Chem Int Ed Engl       Date:  2013-09-20       Impact factor: 15.336

5.  Nuclear magnetic resonance characterization of the refolding intermediate of beta2-microglobulin trapped by non-native prolyl peptide bond.

Authors:  Atsushi Kameda; Masaru Hoshino; Takashi Higurashi; Satoshi Takahashi; Hironobu Naiki; Yuji Goto
Journal:  J Mol Biol       Date:  2005-04-29       Impact factor: 5.469

6.  Oligomeric states along the folding pathways of β2-microglobulin: kinetics, thermodynamics, and structure.

Authors:  E Rennella; T Cutuil; P Schanda; I Ayala; F Gabel; V Forge; A Corazza; G Esposito; B Brutscher
Journal:  J Mol Biol       Date:  2013-05-03       Impact factor: 5.469

7.  HET-SOFAST NMR for fast detection of structural compactness and heterogeneity along polypeptide chains.

Authors:  Paul Schanda; Vincent Forge; Bernhard Brutscher
Journal:  Magn Reson Chem       Date:  2006-07       Impact factor: 2.447

8.  Very fast two-dimensional NMR spectroscopy for real-time investigation of dynamic events in proteins on the time scale of seconds.

Authors:  Paul Schanda; Bernhard Brutscher
Journal:  J Am Chem Soc       Date:  2005-06-08       Impact factor: 15.419

9.  Short selective pulses for biochemical applications.

Authors:  E Kupce; J Boyd; I D Campbell
Journal:  J Magn Reson B       Date:  1995-03

10.  15N H/D-SOLEXSY experiment for accurate measurement of amide solvent exchange rates: application to denatured drkN SH3.

Authors:  Veniamin Chevelkov; Yi Xue; D Krishna Rao; Julie D Forman-Kay; Nikolai R Skrynnikov
Journal:  J Biomol NMR       Date:  2010-02-27       Impact factor: 2.835

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  1 in total

1.  Solution structure of the isolated histone H2A-H2B heterodimer.

Authors:  Yoshihito Moriwaki; Tsutomu Yamane; Hideaki Ohtomo; Mitsunori Ikeguchi; Jun-Ichi Kurita; Masahiko Sato; Aritaka Nagadoi; Hideaki Shimojo; Yoshifumi Nishimura
Journal:  Sci Rep       Date:  2016-05-16       Impact factor: 4.379

  1 in total

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