Literature DB >> 19044980

Accurate determination of crystal structures based on averaged local bond order parameters.

Wolfgang Lechner1, Christoph Dellago.   

Abstract

Local bond order parameters based on spherical harmonics, also known as Steinhardt order parameters, are often used to determine crystal structures in molecular simulations. Here we propose a modification of this method in which the complex bond order vectors are averaged over the first neighbor shell of a given particle and the particle itself. As demonstrated using soft particle systems, this averaging procedure considerably improves the accuracy with which different crystal structures can be distinguished.

Year:  2008        PMID: 19044980     DOI: 10.1063/1.2977970

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  54 in total

1.  Re-entrant melting as a design principle for DNA-coated colloids.

Authors:  Stefano Angioletti-Uberti; Bortolo M Mognetti; Daan Frenkel
Journal:  Nat Mater       Date:  2012-04-29       Impact factor: 43.841

2.  Formation of a crystal nucleus from liquid.

Authors:  Takeshi Kawasaki; Hajime Tanaka
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-27       Impact factor: 11.205

3.  Direct calculation of ice homogeneous nucleation rate for a molecular model of water.

Authors:  Amir Haji-Akbari; Pablo G Debenedetti
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-03       Impact factor: 11.205

4.  Avalanches mediate crystallization in a hard-sphere glass.

Authors:  Eduardo Sanz; Chantal Valeriani; Emanuela Zaccarelli; Wilson C K Poon; Michael E Cates; Peter N Pusey
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-04       Impact factor: 11.205

5.  Quasi-Two-Dimensional Phase Transition of Methane Adsorbed in Cylindrical Silica Mesopores.

Authors:  Daniel W Siderius; William P Krekelberg; Wei-Shan Chiang; Vincent K Shen; Yun Liu
Journal:  Langmuir       Date:  2017-12-11       Impact factor: 3.882

6.  Structural origin of enhanced slow dynamics near a wall in glass-forming systems.

Authors:  Keiji Watanabe; Takeshi Kawasaki; Hajime Tanaka
Journal:  Nat Mater       Date:  2011-05-29       Impact factor: 43.841

7.  Mesophase behaviour of polyhedral particles.

Authors:  Umang Agarwal; Fernando A Escobedo
Journal:  Nat Mater       Date:  2011-02-13       Impact factor: 43.841

8.  Anisotropy and roughness of the solid-liquid interface of BCC Fe.

Authors:  Yongli Sun; Yongquan Wu; Xiuming Lu; Rong Li; Junjiang Xiao
Journal:  J Mol Model       Date:  2015-01-31       Impact factor: 1.810

9.  Determining the three-dimensional atomic structure of an amorphous solid.

Authors:  Yao Yang; Jihan Zhou; Fan Zhu; Yakun Yuan; Dillan J Chang; Dennis S Kim; Minh Pham; Arjun Rana; Xuezeng Tian; Yonggang Yao; Stanley J Osher; Andreas K Schmid; Liangbing Hu; Peter Ercius; Jianwei Miao
Journal:  Nature       Date:  2021-03-31       Impact factor: 49.962

10.  Beyond icosahedral symmetry in packings of proteins in spherical shells.

Authors:  Majid Mosayebi; Deborah K Shoemark; Jordan M Fletcher; Richard B Sessions; Noah Linden; Derek N Woolfson; Tanniemola B Liverpool
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-08       Impact factor: 11.205

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