Literature DB >> 26240318

Direct calculation of ice homogeneous nucleation rate for a molecular model of water.

Amir Haji-Akbari1, Pablo G Debenedetti2.   

Abstract

Ice formation is ubiquitous in nature, with important consequences in a variety of environments, including biological cells, soil, aircraft, transportation infrastructure, and atmospheric clouds. However, its intrinsic kinetics and microscopic mechanism are difficult to discern with current experiments. Molecular simulations of ice nucleation are also challenging, and direct rate calculations have only been performed for coarse-grained models of water. For molecular models, only indirect estimates have been obtained, e.g., by assuming the validity of classical nucleation theory. We use a path sampling approach to perform, to our knowledge, the first direct rate calculation of homogeneous nucleation of ice in a molecular model of water. We use TIP4P/Ice, the most accurate among existing molecular models for studying ice polymorphs. By using a novel topological approach to distinguish different polymorphs, we are able to identify a freezing mechanism that involves a competition between cubic and hexagonal ice in the early stages of nucleation. In this competition, the cubic polymorph takes over because the addition of new topological structural motifs consistent with cubic ice leads to the formation of more compact crystallites. This is not true for topological hexagonal motifs, which give rise to elongated crystallites that are not able to grow. This leads to transition states that are rich in cubic ice, and not the thermodynamically stable hexagonal polymorph. This mechanism provides a molecular explanation for the earlier experimental and computational observations of the preference for cubic ice in the literature.

Entities:  

Keywords:  ice; molecular simulations; nucleation; statistical mechanics; water

Mesh:

Substances:

Year:  2015        PMID: 26240318      PMCID: PMC4553815          DOI: 10.1073/pnas.1509267112

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  34 in total

1.  Structural transformation in supercooled water controls the crystallization rate of ice.

Authors:  Emily B Moore; Valeria Molinero
Journal:  Nature       Date:  2011-11-23       Impact factor: 49.962

2.  Structure of ice crystallized from supercooled water.

Authors:  Tamsin L Malkin; Benjamin J Murray; Andrey V Brukhno; Jamshed Anwar; Christoph G Salzmann
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-09       Impact factor: 11.205

3.  The formation of cubic ice under conditions relevant to Earth's atmosphere.

Authors:  Benjamin J Murray; Daniel A Knopf; Allan K Bertram
Journal:  Nature       Date:  2005-03-10       Impact factor: 49.962

4.  Metadynamics simulations of ice nucleation and growth.

Authors:  D Quigley; P M Rodger
Journal:  J Chem Phys       Date:  2008-04-21       Impact factor: 3.488

5.  Nucleation in emulsified supercooled water.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1985-11-01

6.  Stacking disorder in ice I.

Authors:  Tamsin L Malkin; Benjamin J Murray; Christoph G Salzmann; Valeria Molinero; Steven J Pickering; Thomas F Whale
Journal:  Phys Chem Chem Phys       Date:  2015-01-07       Impact factor: 3.676

7.  Local order parameters for use in driving homogeneous ice nucleation with all-atom models of water.

Authors:  Aleks Reinhardt; Jonathan P K Doye; Eva G Noya; Carlos Vega
Journal:  J Chem Phys       Date:  2012-11-21       Impact factor: 3.488

8.  Metastable liquid-liquid transition in a molecular model of water.

Authors:  Jeremy C Palmer; Fausto Martelli; Yang Liu; Roberto Car; Athanassios Z Panagiotopoulos; Pablo G Debenedetti
Journal:  Nature       Date:  2014-06-19       Impact factor: 49.962

9.  Ultrafast X-ray probing of water structure below the homogeneous ice nucleation temperature.

Authors:  J A Sellberg; C Huang; T A McQueen; N D Loh; H Laksmono; D Schlesinger; R G Sierra; D Nordlund; C Y Hampton; D Starodub; D P DePonte; M Beye; C Chen; A V Martin; A Barty; K T Wikfeldt; T M Weiss; C Caronna; J Feldkamp; L B Skinner; M M Seibert; M Messerschmidt; G J Williams; S Boutet; L G M Pettersson; M J Bogan; A Nilsson
Journal:  Nature       Date:  2014-06-19       Impact factor: 49.962

10.  Sensitivity of liquid clouds to homogenous freezing parameterizations.

Authors:  Ross J Herbert; Benjamin J Murray; Steven J Dobbie; Thomas Koop
Journal:  Geophys Res Lett       Date:  2015-03-13       Impact factor: 4.720

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  28 in total

1.  Characterizing key features in the formation of ice and gas hydrate systems.

Authors:  Shuai Liang; Kyle Wm Hall; Aatto Laaksonen; Zhengcai Zhang; Peter G Kusalik
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2019-06-03       Impact factor: 4.226

2.  Evidence from mixed hydrate nucleation for a funnel model of crystallization.

Authors:  Kyle Wm Hall; Sheelagh Carpendale; Peter G Kusalik
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-06       Impact factor: 11.205

3.  Effect of material flexibility on the thermodynamics and kinetics of hydrophobically induced evaporation of water.

Authors:  Y Elia Altabet; Amir Haji-Akbari; Pablo G Debenedetti
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-13       Impact factor: 11.205

4.  From water's ephemeral dance, a new order emerges.

Authors:  Jeremy C Palmer
Journal:  Proc Natl Acad Sci U S A       Date:  2019-01-22       Impact factor: 11.205

5.  Ab initio thermodynamics of liquid and solid water.

Authors:  Bingqing Cheng; Edgar A Engel; Jörg Behler; Christoph Dellago; Michele Ceriotti
Journal:  Proc Natl Acad Sci U S A       Date:  2019-01-04       Impact factor: 11.205

6.  Rating antifreeze proteins: Not a breeze.

Authors:  Amir Haji-Akbari
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-28       Impact factor: 11.205

7.  Computational investigation of cold denaturation in the Trp-cage miniprotein.

Authors:  Sang Beom Kim; Jeremy C Palmer; Pablo G Debenedetti
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-25       Impact factor: 11.205

8.  Crystal Nucleation in Liquids: Open Questions and Future Challenges in Molecular Dynamics Simulations.

Authors:  Gabriele C Sosso; Ji Chen; Stephen J Cox; Martin Fitzner; Philipp Pedevilla; Andrea Zen; Angelos Michaelides
Journal:  Chem Rev       Date:  2016-05-26       Impact factor: 60.622

9.  Blocking rapid ice crystal growth through nonbasal plane adsorption of antifreeze proteins.

Authors:  Luuk L C Olijve; Konrad Meister; Arthur L DeVries; John G Duman; Shuaiqi Guo; Huib J Bakker; Ilja K Voets
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-02       Impact factor: 11.205

10.  Role of stacking disorder in ice nucleation.

Authors:  Laura Lupi; Arpa Hudait; Baron Peters; Michael Grünwald; Ryan Gotchy Mullen; Andrew H Nguyen; Valeria Molinero
Journal:  Nature       Date:  2017-11-08       Impact factor: 49.962

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