Literature DB >> 19033467

Structural consequences of effector protein complex formation in a diiron hydroxylase.

Lucas J Bailey1, Jason G McCoy, George N Phillips, Brian G Fox.   

Abstract

Carboxylate-bridged diiron hydroxylases are multicomponent enzyme complexes responsible for the catabolism of a wide range of hydrocarbons and as such have drawn attention for their mechanism of action and potential uses in bioremediation and enzymatic synthesis. These enzyme complexes use a small molecular weight effector protein to modulate the function of the hydroxylase. However, the origin of these functional changes is poorly understood. Here, we report the structures of the biologically relevant effector protein-hydroxylase complex of toluene 4-monooxygenase in 2 redox states. The structures reveal a number of coordinated changes that occur up to 25 A from the active site and poise the diiron center for catalysis. The results provide a structural basis for the changes observed in a number of the measurable properties associated with effector protein binding. This description provides insight into the functional role of effector protein binding in all carboxylate-bridged diiron hydroxylases.

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Year:  2008        PMID: 19033467      PMCID: PMC2614738          DOI: 10.1073/pnas.0807948105

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  32 in total

1.  Dioxygen Activation by Enzymes Containing Binuclear Non-Heme Iron Clusters.

Authors:  Bradley J. Wallar; John D. Lipscomb
Journal:  Chem Rev       Date:  1996-11-07       Impact factor: 60.622

2.  Threonine 201 in the diiron enzyme toluene 4-monooxygenase is not required for catalysis.

Authors:  J D Pikus; K H Mitchell; J M Studts; K McClay; R J Steffan; B G Fox
Journal:  Biochemistry       Date:  2000-02-01       Impact factor: 3.162

3.  X-ray crystal structures of manganese(II)-reconstituted and native toluene/o-xylene monooxygenase hydroxylase reveal rotamer shifts in conserved residues and an enhanced view of the protein interior.

Authors:  Michael S McCormick; Matthew H Sazinsky; Karen L Condon; Stephen J Lippard
Journal:  J Am Chem Soc       Date:  2006-11-29       Impact factor: 15.419

4.  Inactivation of the regulatory protein B of soluble methane monooxygenase from Methylococcus capsulatus (Bath) by proteolysis can be overcome by a Gly to Gln modification.

Authors:  J S Lloyd; A Bhambra; J C Murrell; H Dalton
Journal:  Eur J Biochem       Date:  1997-08-15

5.  Dioxygen Activation and Methane Hydroxylation by Soluble Methane Monooxygenase: A Tale of Two Irons and Three Proteins A list of abbreviations can be found in Section 7.

Authors:  Maarten Merkx; Daniel A. Kopp; Matthew H. Sazinsky; Jessica L. Blazyk; Jens Müller; Stephen J. Lippard
Journal:  Angew Chem Int Ed Engl       Date:  2001-08-03       Impact factor: 15.336

Review 6.  Evolution of the soluble diiron monooxygenases.

Authors:  Joseph G Leahy; Patricia J Batchelor; Suzanne M Morcomb
Journal:  FEMS Microbiol Rev       Date:  2003-10       Impact factor: 16.408

7.  Methane monooxygenase component B and reductase alter the regioselectivity of the hydroxylase component-catalyzed reactions. A novel role for protein-protein interactions in an oxygenase mechanism.

Authors:  W A Froland; K K Andersson; S K Lee; Y Liu; J D Lipscomb
Journal:  J Biol Chem       Date:  1992-09-05       Impact factor: 5.157

8.  Characterization of the arene-oxidizing intermediate in ToMOH as a diiron(III) species.

Authors:  Leslie J Murray; Sunil G Naik; Danilo O Ortillo; Ricardo García-Serres; Jessica K Lee; Boi Hanh Huynh; Stephen J Lippard
Journal:  J Am Chem Soc       Date:  2007-10-30       Impact factor: 15.419

9.  Dioxygen activation at non-heme diiron centers: oxidation of a proximal residue in the I100W variant of toluene/o-xylene monooxygenase hydroxylase.

Authors:  Leslie J Murray; Ricardo García-Serres; Michael S McCormick; Roman Davydov; Sunil G Naik; Sun-Hee Kim; Brian M Hoffman; Boi Hanh Huynh; Stephen J Lippard
Journal:  Biochemistry       Date:  2007-11-29       Impact factor: 3.162

10.  CAVER: a new tool to explore routes from protein clefts, pockets and cavities.

Authors:  Martin Petrek; Michal Otyepka; Pavel Banás; Pavlína Kosinová; Jaroslav Koca; Jirí Damborský
Journal:  BMC Bioinformatics       Date:  2006-06-22       Impact factor: 3.169

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  45 in total

1.  Insights into the different dioxygen activation pathways of methane and toluene monooxygenase hydroxylases.

Authors:  Arteum D Bochevarov; Jianing Li; Woon Ju Song; Richard A Friesner; Stephen J Lippard
Journal:  J Am Chem Soc       Date:  2011-04-25       Impact factor: 15.419

Review 2.  Substrate tunnels in enzymes: structure-function relationships and computational methodology.

Authors:  Laura J Kingsley; Markus A Lill
Journal:  Proteins       Date:  2015-02-28

Review 3.  Dioxygen Activation by Nonheme Diiron Enzymes: Diverse Dioxygen Adducts, High-Valent Intermediates, and Related Model Complexes.

Authors:  Andrew J Jasniewski; Lawrence Que
Journal:  Chem Rev       Date:  2018-02-05       Impact factor: 60.622

4.  Performance of ZDOCK in CAPRI rounds 20-26.

Authors:  Thom Vreven; Brian G Pierce; Howook Hwang; Zhiping Weng
Journal:  Proteins       Date:  2013-12

5.  Coupling Oxygen Consumption with Hydrocarbon Oxidation in Bacterial Multicomponent Monooxygenases.

Authors:  Weixue Wang; Alexandria D Liang; Stephen J Lippard
Journal:  Acc Chem Res       Date:  2015-08-21       Impact factor: 22.384

6.  In-crystal reaction cycle of a toluene-bound diiron hydroxylase.

Authors:  Justin F Acheson; Lucas J Bailey; Thomas C Brunold; Brian G Fox
Journal:  Nature       Date:  2017-03-27       Impact factor: 49.962

Review 7.  Assembly of nonheme Mn/Fe active sites in heterodinuclear metalloproteins.

Authors:  Julia J Griese; Vivek Srinivas; Martin Högbom
Journal:  J Biol Inorg Chem       Date:  2014-04-26       Impact factor: 3.358

8.  Characterization of a peroxodiiron(III) intermediate in the T201S variant of toluene/o-xylene monooxygenase hydroxylase from Pseudomonas sp. OX1.

Authors:  Woon Ju Song; Rachel K Behan; Sunil G Naik; Boi Hanh Huynh; Stephen J Lippard
Journal:  J Am Chem Soc       Date:  2009-05-06       Impact factor: 15.419

9.  Structural Basis for Oxygen Activation at a Heterodinuclear Manganese/Iron Cofactor.

Authors:  Julia J Griese; Ramona Kositzki; Peer Schrapers; Rui M M Branca; Anders Nordström; Janne Lehtiö; Michael Haumann; Martin Högbom
Journal:  J Biol Chem       Date:  2015-08-31       Impact factor: 5.157

10.  Revisiting the mechanism of dioxygen activation in soluble methane monooxygenase from M. capsulatus (Bath): evidence for a multi-step, proton-dependent reaction pathway.

Authors:  Christine E Tinberg; Stephen J Lippard
Journal:  Biochemistry       Date:  2009-12-29       Impact factor: 3.162

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