Literature DB >> 19029306

A critical assessment of the utility of protein-free splicing systems.

Duncan J Smith1, Maria M Konarska.   

Abstract

U2 and U6 snRNAs form part of the catalytic spliceosome and represent strong candidates for components of its active site. Over the past decade it has become clear that these snRNAs are capable of catalyzing several different chemical reactions, leading to the widespread conclusion that the spliceosome is a ribozyme. Here, we discuss the advances in both protein-free and fully spliceosomal systems that would be required to conclude that the reactions observed to be catalyzed by protein-free snRNAs are related to splicing and question the reliability of snRNA-only systems as tools for mechanistic splicing research.

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Year:  2008        PMID: 19029306      PMCID: PMC2612767          DOI: 10.1261/rna.1322709

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  13 in total

Review 1.  Chance and necessity in the selection of nucleic acid catalysts.

Authors:  J R Lorsch; J W Szostak
Journal:  Acc Chem Res       Date:  1996-02       Impact factor: 22.384

Review 2.  Pre-mRNA splicing: awash in a sea of proteins.

Authors:  Melissa S Jurica; Melissa J Moore
Journal:  Mol Cell       Date:  2003-07       Impact factor: 17.970

3.  Multiple functions for the invariant AGC triad of U6 snRNA.

Authors:  Angela K Hilliker; Jonathan P Staley
Journal:  RNA       Date:  2004-06       Impact factor: 4.942

4.  Protein-free spliceosomal snRNAs catalyze a reaction that resembles the first step of splicing.

Authors:  Saba Valadkhan; Afshin Mohammadi; Chaim Wachtel; James L Manley
Journal:  RNA       Date:  2007-10-16       Impact factor: 4.942

5.  Structural elucidation of a PRP8 core domain from the heart of the spliceosome.

Authors:  Dustin B Ritchie; Matthew J Schellenberg; Emily M Gesner; Sheetal A Raithatha; David T Stuart; Andrew M Macmillan
Journal:  Nat Struct Mol Biol       Date:  2008-10-02       Impact factor: 15.369

6.  Structure and function of an RNase H domain at the heart of the spliceosome.

Authors:  Vladimir Pena; Alexey Rozov; Patrizia Fabrizio; Reinhard Lührmann; Markus C Wahl
Journal:  EMBO J       Date:  2008-10-09       Impact factor: 11.598

7.  Crystal structure of the beta-finger domain of Prp8 reveals analogy to ribosomal proteins.

Authors:  Kui Yang; Lingdi Zhang; Tao Xu; Annie Heroux; Rui Zhao
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-08       Impact factor: 11.205

Review 8.  "Nought may endure but mutability": spliceosome dynamics and the regulation of splicing.

Authors:  Duncan J Smith; Charles C Query; Maria M Konarska
Journal:  Mol Cell       Date:  2008-06-20       Impact factor: 17.970

9.  Crystal structure of a self-spliced group II intron.

Authors:  Navtej Toor; Kevin S Keating; Sean D Taylor; Anna Marie Pyle
Journal:  Science       Date:  2008-04-04       Impact factor: 47.728

10.  Metal ion catalysis during group II intron self-splicing: parallels with the spliceosome.

Authors:  E J Sontheimer; P M Gordon; J A Piccirilli
Journal:  Genes Dev       Date:  1999-07-01       Impact factor: 11.361

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  9 in total

1.  The use of simple model systems to study spliceosomal catalysis.

Authors:  Saba Valadkhan; James L Manley
Journal:  RNA       Date:  2008-11-24       Impact factor: 4.942

2.  Identification and characterization of a short 2'-3' bond-forming ribozyme.

Authors:  Duncan J Smith; Maria M Konarska
Journal:  RNA       Date:  2008-11-24       Impact factor: 4.942

3.  RNA structure analysis of human spliceosomes reveals a compact 3D arrangement of snRNAs at the catalytic core.

Authors:  Maria Anokhina; Sergey Bessonov; Zhichao Miao; Eric Westhof; Klaus Hartmuth; Reinhard Lührmann
Journal:  EMBO J       Date:  2013-09-03       Impact factor: 11.598

4.  The spliceosome as ribozyme hypothesis takes a second step.

Authors:  Samuel E Butcher
Journal:  Proc Natl Acad Sci U S A       Date:  2009-07-21       Impact factor: 11.205

Review 5.  Model systems: how chemical biologists study RNA.

Authors:  Andro C Rios; Yitzhak Tor
Journal:  Curr Opin Chem Biol       Date:  2009-10-29       Impact factor: 8.822

Review 6.  Spliceosome structure and function.

Authors:  Cindy L Will; Reinhard Lührmann
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-07-01       Impact factor: 10.005

7.  Locus-specific epigenetic remodeling controls addiction- and depression-related behaviors.

Authors:  Elizabeth A Heller; Hannah M Cates; Catherine J Peña; Haosheng Sun; Ningyi Shao; Jian Feng; Sam A Golden; James P Herman; Jessica J Walsh; Michelle Mazei-Robison; Deveroux Ferguson; Scott Knight; Mark A Gerber; Christian Nievera; Ming-Hu Han; Scott J Russo; Carol S Tamminga; Rachael L Neve; Li Shen; H Steve Zhang; Feng Zhang; Eric J Nestler
Journal:  Nat Neurosci       Date:  2014-10-27       Impact factor: 24.884

Review 8.  Lights, camera, action! Capturing the spliceosome and pre-mRNA splicing with single-molecule fluorescence microscopy.

Authors:  Alexander C DeHaven; Ian S Norden; Aaron A Hoskins
Journal:  Wiley Interdiscip Rev RNA       Date:  2016-05-20       Impact factor: 9.957

9.  RNA catalyses nuclear pre-mRNA splicing.

Authors:  Sebastian M Fica; Nicole Tuttle; Thaddeus Novak; Nan-Sheng Li; Jun Lu; Prakash Koodathingal; Qing Dai; Jonathan P Staley; Joseph A Piccirilli
Journal:  Nature       Date:  2013-11-06       Impact factor: 49.962

  9 in total

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