Literature DB >> 19013274

Structural synergy and molecular crosstalk between bacterial helicase loaders and replication initiators.

Melissa L Mott1, Jan P Erzberger, Mary M Coons, James M Berger.   

Abstract

The loading of oligomeric helicases onto replication origins marks an essential step in replisome assembly. In cells, dedicated AAA+ ATPases regulate loading, however, the mechanism by which these factors recruit and deposit helicases has remained unclear. To better understand this process, we determined the structure of the ATPase region of the bacterial helicase loader DnaC from Aquifex aeolicus to 2.7 A resolution. The structure shows that DnaC is a close paralog of the bacterial replication initiator, DnaA, and unexpectedly shares an ability to form a helical assembly similar to that of ATP-bound DnaA. Complementation and ssDNA-binding assays validate the importance of homomeric DnaC interactions, while pull-down experiments show that the DnaC and DnaA AAA+ domains interact in a nucleotide-dependent manner. These findings implicate DnaC as a molecular adaptor that uses ATP-activated DnaA as a docking site for regulating the recruitment and correct spatial deposition of the DnaB helicase onto origins.

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Year:  2008        PMID: 19013274      PMCID: PMC2610854          DOI: 10.1016/j.cell.2008.09.058

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  59 in total

Review 1.  ATPase switches controlling DNA replication initiation.

Authors:  D G Lee; S P Bell
Journal:  Curr Opin Cell Biol       Date:  2000-06       Impact factor: 8.382

2.  Chemistry and biology.

Authors:  G A Petsko
Journal:  Proc Natl Acad Sci U S A       Date:  2000-01-18       Impact factor: 11.205

3.  Replisome assembly at oriC, the replication origin of E. coli, reveals an explanation for initiation sites outside an origin.

Authors:  L Fang; M J Davey; M O'Donnell
Journal:  Mol Cell       Date:  1999-10       Impact factor: 17.970

4.  ATP- and ADP-dnaA protein, a molecular switch in gene regulation.

Authors:  C Speck; C Weigel; W Messer
Journal:  EMBO J       Date:  1999-11-01       Impact factor: 11.598

Review 5.  DnaA: controlling the initiation of bacterial DNA replication and more.

Authors:  Jon M Kaguni
Journal:  Annu Rev Microbiol       Date:  2006       Impact factor: 15.500

6.  A common mechanism for the ATP-DnaA-dependent formation of open complexes at the replication origin.

Authors:  Shogo Ozaki; Hironori Kawakami; Kenta Nakamura; Norie Fujikawa; Wataru Kagawa; Sam-Yong Park; Shigeyuki Yokoyama; Hitoshi Kurumizaka; Tsutomu Katayama
Journal:  J Biol Chem       Date:  2008-01-23       Impact factor: 5.157

Review 7.  AAA+ ATPases in the initiation of DNA replication.

Authors:  Karl E Duderstadt; James M Berger
Journal:  Crit Rev Biochem Mol Biol       Date:  2008 May-Jun       Impact factor: 8.250

8.  The Methanothermobacter thermautotrophicus Cdc6-2 protein, the putative helicase loader, dissociates the minichromosome maintenance helicase.

Authors:  Jae-Ho Shin; Gun Young Heo; Zvi Kelman
Journal:  J Bacteriol       Date:  2008-04-04       Impact factor: 3.490

9.  Replication origin recognition and deformation by a heterodimeric archaeal Orc1 complex.

Authors:  Erin L Cunningham Dueber; Jacob E Corn; Stephen D Bell; James M Berger
Journal:  Science       Date:  2007-08-31       Impact factor: 47.728

10.  Helicase binding to DnaI exposes a cryptic DNA-binding site during helicase loading in Bacillus subtilis.

Authors:  Charikleia Ioannou; Patrick M Schaeffer; Nicholas E Dixon; Panos Soultanas
Journal:  Nucleic Acids Res       Date:  2006-09-26       Impact factor: 16.971

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  73 in total

Review 1.  Regulation of DnaA assembly and activity: taking directions from the genome.

Authors:  Alan C Leonard; Julia E Grimwade
Journal:  Annu Rev Microbiol       Date:  2011       Impact factor: 15.500

Review 2.  Essential biological processes of an emerging pathogen: DNA replication, transcription, and cell division in Acinetobacter spp.

Authors:  Andrew Robinson; Anthony J Brzoska; Kylie M Turner; Ryan Withers; Elizabeth J Harry; Peter J Lewis; Nicholas E Dixon
Journal:  Microbiol Mol Biol Rev       Date:  2010-06       Impact factor: 11.056

3.  Origin remodeling and opening in bacteria rely on distinct assembly states of the DnaA initiator.

Authors:  Karl E Duderstadt; Melissa L Mott; Nancy J Crisona; Kevin Chuang; Haw Yang; James M Berger
Journal:  J Biol Chem       Date:  2010-07-01       Impact factor: 5.157

4.  Primosomal proteins DnaD and DnaB are recruited to chromosomal regions bound by DnaA in Bacillus subtilis.

Authors:  Wiep Klaas Smits; Houra Merrikh; Carla Yaneth Bonilla; Alan D Grossman
Journal:  J Bacteriol       Date:  2010-11-19       Impact factor: 3.490

5.  DNA replication: making two forks from one prereplication complex.

Authors:  Michael Botchan; James Berger
Journal:  Mol Cell       Date:  2010-12-22       Impact factor: 17.970

6.  Substitutions of Conserved Residues in the C-terminal Region of DnaC Cause Thermolability in Helicase Loading.

Authors:  Magdalena M Felczak; Jay M Sage; Katarzyna Hupert-Kocurek; Senem Aykul; Jon M Kaguni
Journal:  J Biol Chem       Date:  2016-01-04       Impact factor: 5.157

7.  An AAA+ ATPase Clamshell Targets Transposition.

Authors:  Chi-Lin Tsai; Gareth J Williams; J Jefferson P Perry; John A Tainer
Journal:  Cell       Date:  2015-08-13       Impact factor: 41.582

8.  An Atypical AAA+ ATPase Assembly Controls Efficient Transposition through DNA Remodeling and Transposase Recruitment.

Authors:  Ernesto Arias-Palomo; James M Berger
Journal:  Cell       Date:  2015-08-13       Impact factor: 41.582

Review 9.  Mechanisms of Theta Plasmid Replication in Enterobacteria and Implications for Adaptation to Its Host.

Authors:  Jay W Kim; Vega Bugata; Gerardo Cortés-Cortés; Giselle Quevedo-Martínez; Manel Camps
Journal:  EcoSal Plus       Date:  2020-11

10.  Ordered association of helicase loader proteins with the Bacillus subtilis origin of replication in vivo.

Authors:  Wiep Klaas Smits; Alexi I Goranov; Alan D Grossman
Journal:  Mol Microbiol       Date:  2009-12-04       Impact factor: 3.501

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