Literature DB >> 19012538

DNA excited-state dynamics: from single bases to the double helix.

Chris T Middleton1, Kimberly de La Harpe, Charlene Su, Yu Kay Law, Carlos E Crespo-Hernández, Bern Kohler.   

Abstract

Ultraviolet light is strongly absorbed by DNA, producing excited electronic states that sometimes initiate damaging photochemical reactions. Fully mapping the reactive and nonreactive decay pathways available to excited electronic states in DNA is a decades-old quest. Progress toward this goal has accelerated rapidly in recent years, in large measure because of ultrafast laser experiments. Here we review recent discoveries and controversies concerning the nature and dynamics of excited states in DNA model systems in solution. Nonradiative decay by single, solvated nucleotides occurs primarily on the subpicosecond timescale. Surprisingly, excess electronic energy relaxes one or two orders of magnitude more slowly in DNA oligo- and polynucleotides. Highly efficient nonradiative decay pathways guarantee that most excited states do not lead to deleterious reactions but instead relax back to the electronic ground state. Understanding how the spatial organization of the bases controls the relaxation of excess electronic energy in the double helix and in alternative structures is currently one of the most exciting challenges in the field.

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Year:  2009        PMID: 19012538     DOI: 10.1146/annurev.physchem.59.032607.093719

Source DB:  PubMed          Journal:  Annu Rev Phys Chem        ISSN: 0066-426X            Impact factor:   12.703


  66 in total

1.  DNA as UV light-harvesting antenna.

Authors:  Ivan L Volkov; Zakhar V Reveguk; Pavel Yu Serdobintsev; Ruslan R Ramazanov; Alexei I Kononov
Journal:  Nucleic Acids Res       Date:  2018-04-20       Impact factor: 16.971

2.  Conical intersections in solution: formulation, algorithm, and implementation with combined quantum mechanics/molecular mechanics method.

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Journal:  J Chem Phys       Date:  2011-05-28       Impact factor: 3.488

3.  Strand separation establishes a sustained lock at the Tus-Ter replication fork barrier.

Authors:  Bojk A Berghuis; David Dulin; Zhi-Qiang Xu; Theo van Laar; Bronwen Cross; Richard Janissen; Slobodan Jergic; Nicholas E Dixon; Martin Depken; Nynke H Dekker
Journal:  Nat Chem Biol       Date:  2015-07-06       Impact factor: 15.040

4.  Photochemical pathways in nucleobases measured with an X-ray FEL.

Authors:  Thomas J A Wolf; Markus Gühr
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2019-05-20       Impact factor: 4.226

5.  The effect of DNA backbone on the triplet mechanism of UV-induced thymine-thymine (6-4) dimer formation.

Authors:  Xingyong Wang; Haibo Yu
Journal:  J Mol Model       Date:  2018-10-23       Impact factor: 1.810

6.  Biomechanics of DNA structures visualized by 4D electron microscopy.

Authors:  Ulrich J Lorenz; Ahmed H Zewail
Journal:  Proc Natl Acad Sci U S A       Date:  2013-02-04       Impact factor: 11.205

7.  Ultrafast dynamics of nonequilibrium electron transfer in photoinduced redox cycle: solvent mediation and conformation flexibility.

Authors:  Ya-Ting Kao; Xunmin Guo; Yi Yang; Zheyun Liu; Ali Hassanali; Qin-Hua Song; Lijuan Wang; Dongping Zhong
Journal:  J Phys Chem B       Date:  2012-07-19       Impact factor: 2.991

8.  Charge separation and charge delocalization identified in long-living states of photoexcited DNA.

Authors:  Dominik B Bucher; Bert M Pilles; Thomas Carell; Wolfgang Zinth
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-10       Impact factor: 11.205

9.  Superresolution intrinsic fluorescence imaging of chromatin utilizing native, unmodified nucleic acids for contrast.

Authors:  Biqin Dong; Luay M Almassalha; Yolanda Stypula-Cyrus; Ben E Urban; John E Chandler; The-Quyen Nguyen; Cheng Sun; Hao F Zhang; Vadim Backman
Journal:  Proc Natl Acad Sci U S A       Date:  2016-08-17       Impact factor: 11.205

10.  Deuterium isotope effect on excited-state dynamics in an alternating GC oligonucleotide.

Authors:  Kimberly de La Harpe; Carlos E Crespo-Hernández; Bern Kohler
Journal:  J Am Chem Soc       Date:  2009-12-09       Impact factor: 15.419

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