Literature DB >> 26147356

Strand separation establishes a sustained lock at the Tus-Ter replication fork barrier.

Bojk A Berghuis1, David Dulin1, Zhi-Qiang Xu2, Theo van Laar1, Bronwen Cross1, Richard Janissen1, Slobodan Jergic2, Nicholas E Dixon2, Martin Depken1, Nynke H Dekker1.   

Abstract

The bidirectional replication of a circular chromosome by many bacteria necessitates proper termination to avoid the head-on collision of the opposing replisomes. In Escherichia coli, replisome progression beyond the termination site is prevented by Tus proteins bound to asymmetric Ter sites. Structural evidence indicates that strand separation on the blocking (nonpermissive) side of Tus-Ter triggers roadblock formation, but biochemical evidence also suggests roles for protein-protein interactions. Here DNA unzipping experiments demonstrate that nonpermissively oriented Tus-Ter forms a tight lock in the absence of replicative proteins, whereas permissively oriented Tus-Ter allows nearly unhindered strand separation. Quantifying the lock strength reveals the existence of several intermediate lock states that are impacted by mutations in the lock domain but not by mutations in the DNA-binding domain. Lock formation is highly specific and exceeds reported in vivo efficiencies. We postulate that protein-protein interactions may actually hinder, rather than promote, proper lock formation.

Entities:  

Mesh:

Substances:

Year:  2015        PMID: 26147356     DOI: 10.1038/nchembio.1857

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  32 in total

1.  Reversible unfolding of single RNA molecules by mechanical force.

Authors:  J Liphardt; B Onoa; S B Smith; I Tinoco; C Bustamante
Journal:  Science       Date:  2001-04-27       Impact factor: 47.728

2.  Interaction of the Escherichia coli replication terminator protein (Tus) with DNA: a model derived from DNA-binding studies of mutant proteins by surface plasmon resonance.

Authors:  C Neylon; S E Brown; A V Kralicek; C S Miles; C A Love; N E Dixon
Journal:  Biochemistry       Date:  2000-10-03       Impact factor: 3.162

Review 3.  Replication termination in Escherichia coli: structure and antihelicase activity of the Tus-Ter complex.

Authors:  Cameron Neylon; Andrew V Kralicek; Thomas M Hill; Nicholas E Dixon
Journal:  Microbiol Mol Biol Rev       Date:  2005-09       Impact factor: 11.056

4.  Nanomechanical measurements of the sequence-dependent folding landscapes of single nucleic acid hairpins.

Authors:  Michael T Woodside; William M Behnke-Parks; Kevan Larizadeh; Kevin Travers; Daniel Herschlag; Steven M Block
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-10       Impact factor: 11.205

5.  A molecular mousetrap determines polarity of termination of DNA replication in E. coli.

Authors:  Mark D Mulcair; Patrick M Schaeffer; Aaron J Oakley; Hannah F Cross; Cameron Neylon; Thomas M Hill; Nicholas E Dixon
Journal:  Cell       Date:  2006-06-30       Impact factor: 41.582

6.  Invincible DNA tethers: covalent DNA anchoring for enhanced temporal and force stability in magnetic tweezers experiments.

Authors:  Richard Janissen; Bojk A Berghuis; David Dulin; Max Wink; Theo van Laar; Nynke H Dekker
Journal:  Nucleic Acids Res       Date:  2014-08-19       Impact factor: 16.971

7.  Mechanistic studies on the impact of transcription on sequence-specific termination of DNA replication and vice versa.

Authors:  B K Mohanty; T Sahoo; D Bastia
Journal:  J Biol Chem       Date:  1998-01-30       Impact factor: 5.157

8.  Escherichia coli replication termination protein impedes the action of helicases.

Authors:  E H Lee; A Kornberg; M Hidaka; T Kobayashi; T Horiuchi
Journal:  Proc Natl Acad Sci U S A       Date:  1989-12       Impact factor: 11.205

9.  Escherichia coli replication terminator protein impedes simian virus 40 (SV40) DNA replication fork movement and SV40 large tumor antigen helicase activity in vitro at a prokaryotic terminus sequence.

Authors:  C L Bedrosian; D Bastia
Journal:  Proc Natl Acad Sci U S A       Date:  1991-04-01       Impact factor: 11.205

10.  The replication terminator protein of the gram-positive bacterium Bacillus subtilis functions as a polar contrahelicase in gram-negative Escherichia coli.

Authors:  S Kaul; B K Mohanty; T Sahoo; I Patel; S A Khan; D Bastia
Journal:  Proc Natl Acad Sci U S A       Date:  1994-11-08       Impact factor: 11.205

View more
  13 in total

1.  The progression of replication forks at natural replication barriers in live bacteria.

Authors:  M Charl Moolman; Sriram Tiruvadi Krishnan; Jacob W J Kerssemakers; Roy de Leeuw; Vincent Lorent; David J Sherratt; Nynke H Dekker
Journal:  Nucleic Acids Res       Date:  2016-05-10       Impact factor: 16.971

2.  DNA replication: Unlocking the secrets of fork arrest.

Authors:  Jun Fan; Terence R Strick
Journal:  Nat Chem Biol       Date:  2015-07-06       Impact factor: 15.040

Review 3.  Rescuing Replication from Barriers: Mechanistic Insights from Single-Molecule Studies.

Authors:  Bo Sun
Journal:  Mol Cell Biol       Date:  2019-04-30       Impact factor: 4.272

4.  Dynamics of TRF1 organizing a single human telomere.

Authors:  Xu Li; Meijie Wang; Wei Zheng; Wei Huang; Zeyu Wang; Kairang Jin; Lin Liu; Zhongbo Yu
Journal:  Nucleic Acids Res       Date:  2021-01-25       Impact factor: 16.971

5.  Dynamics and inhibition of MLL1 CXXC domain on DNA revealed by single-molecule quantification.

Authors:  Lin Liang; Kangkang Ma; Zeyu Wang; Richard Janissen; Zhongbo Yu
Journal:  Biophys J       Date:  2021-07-17       Impact factor: 3.699

Review 6.  Watching cellular machinery in action, one molecule at a time.

Authors:  Enrico Monachino; Lisanne M Spenkelink; Antoine M van Oijen
Journal:  J Cell Biol       Date:  2016-12-15       Impact factor: 10.539

Review 7.  Control of Initiation of DNA Replication in Bacillus subtilis and Escherichia coli.

Authors:  Katie H Jameson; Anthony J Wilkinson
Journal:  Genes (Basel)       Date:  2017-01-10       Impact factor: 4.096

8.  Signatures of Nucleotide Analog Incorporation by an RNA-Dependent RNA Polymerase Revealed Using High-Throughput Magnetic Tweezers.

Authors:  David Dulin; Jamie J Arnold; Theo van Laar; Hyung-Suk Oh; Cheri Lee; Angela L Perkins; Daniel A Harki; Martin Depken; Craig E Cameron; Nynke H Dekker
Journal:  Cell Rep       Date:  2017-10-24       Impact factor: 9.423

9.  Single molecule high-throughput footprinting of small and large DNA ligands.

Authors:  Maria Manosas; Joan Camunas-Soler; Vincent Croquette; Felix Ritort
Journal:  Nat Commun       Date:  2017-08-21       Impact factor: 14.919

Review 10.  Replication Termination: Containing Fork Fusion-Mediated Pathologies in Escherichia coli.

Authors:  Juachi U Dimude; Sarah L Midgley-Smith; Monja Stein; Christian J Rudolph
Journal:  Genes (Basel)       Date:  2016-07-25       Impact factor: 4.096

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.