Literature DB >> 29186575

DNA as UV light-harvesting antenna.

Ivan L Volkov1, Zakhar V Reveguk1, Pavel Yu Serdobintsev1,2, Ruslan R Ramazanov1, Alexei I Kononov1.   

Abstract

The ordered structure of UV chromophores in DNA resembles photosynthetic light-harvesting complexes in which quantum coherence effects play a major role in highly efficient directional energy transfer. The possible role of coherent excitons in energy transport in DNA remains debated. Meanwhile, energy transport properties are greatly important for understanding the mechanisms of photochemical reactions in cellular DNA and for DNA-based artificial nanostructures. Here, we studied energy transfer in DNA complexes formed with silver nanoclusters and with intercalating dye (acridine orange). Steady-state fluorescence measurements with two DNA templates (15-mer DNA duplex and calf thymus DNA) showed that excitation energy can be transferred to the clusters from 21 and 28 nucleobases, respectively. This differed from the DNA-acridine orange complex for which energy transfer took place from four neighboring bases only. Fluorescence up-conversion measurements showed that the energy transfer took place within 100 fs. The efficient energy transport in the Ag-DNA complexes suggests an excitonic mechanism for the transfer, such that the excitation is delocalized over at least four and seven stacked bases, respectively, in one strand of the duplexes stabilizing the clusters. This result demonstrates that the exciton delocalization length in some DNA structures may not be limited to just two bases.

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Year:  2018        PMID: 29186575      PMCID: PMC6283424          DOI: 10.1093/nar/gkx1185

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  63 in total

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2.  Exciton and excimer formation in DNA at room temperature.

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Journal:  Chemphyschem       Date:  2002-08-16       Impact factor: 3.102

Review 3.  UV-induced DNA Damage: The Role of Electronic Excited States.

Authors:  Dimitra Markovitsi
Journal:  Photochem Photobiol       Date:  2015-12-18       Impact factor: 3.421

4.  Exciton states of dynamic DNA double helices: alternating dCdG sequences.

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Journal:  J Phys Chem B       Date:  2005-08-25       Impact factor: 2.991

5.  Gaussian basis sets for accurate calculations on molecular systems in gas and condensed phases.

Authors:  Joost VandeVondele; Jürg Hutter
Journal:  J Chem Phys       Date:  2007-09-21       Impact factor: 3.488

6.  Light harvesting complex II B850 excitation dynamics.

Authors:  Johan Strümpfer; Klaus Schulten
Journal:  J Chem Phys       Date:  2009-12-14       Impact factor: 3.488

Review 7.  Electronic coupling between photo-excited stacked bases in DNA and RNA strands with emphasis on the bright states initially populated.

Authors:  Lisbeth Munksgaard Nielsen; Søren Vrønning Hoffmann; Steen Brøndsted Nielsen
Journal:  Photochem Photobiol Sci       Date:  2013-08       Impact factor: 3.982

8.  Silver(I)-mediated cytosine self-pairing is preferred over hoogsteen-type base pairs with the artificial nucleobase 1,3-dideaza-6-nitropurine.

Authors:  Dominik A Megger; Jens Muller
Journal:  Nucleosides Nucleotides Nucleic Acids       Date:  2010-01       Impact factor: 1.381

9.  DNA charge transport over 34 nm.

Authors:  Jason D Slinker; Natalie B Muren; Sara E Renfrew; Jacqueline K Barton
Journal:  Nat Chem       Date:  2011-01-30       Impact factor: 24.427

10.  Ag-DNA Emitter: Metal Nanorod or Supramolecular Complex?

Authors:  Ruslan R Ramazanov; Tomash S Sych; Zakhar V Reveguk; Dmitriy A Maksimov; Artem A Vdovichev; Alexei I Kononov
Journal:  J Phys Chem Lett       Date:  2016-08-29       Impact factor: 6.475

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  5 in total

1.  Large-scale investigation of the effects of nucleobase sequence on fluorescence excitation and Stokes shifts of DNA-stabilized silver clusters.

Authors:  Stacy M Copp; Anna Gonzàlez-Rosell
Journal:  Nanoscale       Date:  2021-03-04       Impact factor: 7.790

2.  First Step Towards Larger DNA-Based Assemblies of Fluorescent Silver Nanoclusters: Template Design and Detailed Characterization of Optical Properties.

Authors:  Liam E Yourston; Alexander Y Lushnikov; Oleg A Shevchenko; Kirill A Afonin; Alexey V Krasnoslobodtsev
Journal:  Nanomaterials (Basel)       Date:  2019-04-13       Impact factor: 5.076

3.  Micro RNA Sensing with Green Emitting Silver Nanoclusters.

Authors:  Liam E Yourston; Alexey V Krasnoslobodtsev
Journal:  Molecules       Date:  2020-07-02       Impact factor: 4.411

Review 4.  Structure and luminescence of DNA-templated silver clusters.

Authors:  Anna Gonzàlez-Rosell; Cecilia Cerretani; Peter Mastracco; Tom Vosch; Stacy M Copp
Journal:  Nanoscale Adv       Date:  2021-01-21

5.  tRNA as a stabilizing matrix for fluorescent silver clusters: photophysical properties and IR study.

Authors:  Tomash S Sych; Alexander M Polyanichko; Ruslan R Ramazanov; Alexei I Kononov
Journal:  Nanoscale Adv       Date:  2019-07-23
  5 in total

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