Literature DB >> 23382239

Biomechanics of DNA structures visualized by 4D electron microscopy.

Ulrich J Lorenz1, Ahmed H Zewail.   

Abstract

We present a technique for in situ visualization of the biomechanics of DNA structural networks using 4D electron microscopy. Vibrational oscillations of the DNA structure are excited mechanically through a short burst of substrate vibrations triggered by a laser pulse. Subsequently, the motion is probed with electron pulses to observe the impulse response of the specimen in space and time. From the frequency and amplitude of the observed oscillations, we determine the normal modes and eigenfrequencies of the structures involved. Moreover, by selective "nano-cutting" at a given point in the network, it was possible to obtain Young's modulus, and hence the stiffness, of the DNA filament at that position. This experimental approach enables nanoscale mechanics studies of macromolecules and should find applications in other domains of biological networks such as origamis.

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Year:  2013        PMID: 23382239      PMCID: PMC3581949          DOI: 10.1073/pnas.1300630110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  23 in total

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Journal:  Nature       Date:  1999-04-01       Impact factor: 49.962

Review 2.  Single molecule force spectroscopy in biology using the atomic force microscope.

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Journal:  Phys Rev Lett       Date:  2004-04-02       Impact factor: 9.161

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Authors:  Matthias Germann; Tatiana Latychevskaia; Conrad Escher; Hans-Werner Fink
Journal:  Phys Rev Lett       Date:  2010-03-02       Impact factor: 9.161

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Authors:  Jonathan Bath; Andrew J Turberfield
Journal:  Nat Nanotechnol       Date:  2007-05       Impact factor: 39.213

6.  Nanomechanical motions of cantilevers: direct imaging in real space and time with 4D electron microscopy.

Authors:  David J Flannigan; Peter C Samartzis; Aycan Yurtsever; Ahmed H Zewail
Journal:  Nano Lett       Date:  2009-02       Impact factor: 11.189

7.  Nanoscale mechanical drumming visualized by 4D electron microscopy.

Authors:  Oh-Hoon Kwon; Brett Barwick; Hyun Soon Park; J Spencer Baskin; Ahmed H Zewail
Journal:  Nano Lett       Date:  2008-11       Impact factor: 11.189

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Authors:  S B Smith; Y Cui; C Bustamante
Journal:  Science       Date:  1996-02-09       Impact factor: 47.728

9.  A Brillouin scattering study of the hydration of Li- and Na-DNA films.

Authors:  S A Lee; S M Lindsay; J W Powell; T Weidlich; N J Tao; G D Lewen
Journal:  Biopolymers       Date:  1987-10       Impact factor: 2.505

10.  Heat conductivity of DNA double helix.

Authors:  Alexander V Savin; Mikhail A Mazo; Irina P Kikot; Leonid I Manevitch; Alexey V Onufriev
Journal:  Phys Rev B Condens Matter Mater Phys       Date:  2011-06-15
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  4 in total

1.  Exceptional rigidity and biomechanics of amyloid revealed by 4D electron microscopy.

Authors:  Anthony W P Fitzpatrick; Sang Tae Park; Ahmed H Zewail
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-19       Impact factor: 11.205

Review 2.  Correlative fluorescence and electron microscopy.

Authors:  Randall T Schirra; Peijun Zhang
Journal:  Curr Protoc Cytom       Date:  2014-10-01

Review 3.  Three-dimensional structure of the human myosin thick filament: clinical implications.

Authors:  Hind A Al-Khayat
Journal:  Glob Cardiol Sci Pract       Date:  2013-11-01

4.  A rapid and practical technique for real-time monitoring of biomolecular interactions using mechanical responses of macromolecules.

Authors:  Mehmet C Tarhan; Nicolas Lafitte; Yannick Tauran; Laurent Jalabert; Momoko Kumemura; Grégoire Perret; Beomjoon Kim; Anthony W Coleman; Hiroyuki Fujita; Dominique Collard
Journal:  Sci Rep       Date:  2016-06-16       Impact factor: 4.379

  4 in total

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