Literature DB >> 19011029

Genome sequence of the probiotic bacterium Bifidobacterium animalis subsp. lactis AD011.

Jihyun F Kim1, Haeyoung Jeong, Dong Su Yu, Sang-Haeng Choi, Cheol-Goo Hur, Myeong-Soo Park, Sung Ho Yoon, Dae-Won Kim, Geun Eog Ji, Hong-Seog Park, Tae Kwang Oh.   

Abstract

Bifidobacterium animalis subsp. lactis is a probiotic bacterium that naturally inhabits the guts of most mammals, including humans. Here we report the complete genome sequence of B. animalis subsp. lactis AD011 that was isolated from an infant fecal sample. Biological functions encoded in a single circular chromosome of 1,933,695 bp, smallest among the completely sequenced bifidobacterial genomes, are suggestive of their probiotic functions, such as utilization of bifidogenic factors and a variety of glycosidic enzymes and biosynthesis of polysaccharides.

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Year:  2008        PMID： 19011029      PMCID： PMC2620821          DOI： 10.1128/JB.01515-08

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  14 in total

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Review 3.  Gut flora in health and disease.

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Review 4.  Getting better with bifidobacteria.

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6.  The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract.

Authors:  Mark A Schell; Maria Karmirantzou; Berend Snel; David Vilanova; Bernard Berger; Gabriella Pessi; Marie-Camille Zwahlen; Frank Desiere; Peer Bork; Michele Delley; R David Pridmore; Fabrizio Arigoni
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-15       Impact factor: 11.205

7.  CRITICA: coding region identification tool invoking comparative analysis.

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8.  Polyphasic taxonomic analysis of Bifidobacterium animalis and Bifidobacterium lactis reveals relatedness at the subspecies level: reclassification of Bifidobacterium animalis as Bifidobacterium animalis subsp. animalis subsp. nov. and Bifidobacterium lactis as Bifidobacterium animalis subsp. lactis subsp. nov.

Authors:  Liesbeth Masco; Marco Ventura; Ralf Zink; Geert Huys; Jean Swings
Journal:  Int J Syst Evol Microbiol       Date:  2004-07       Impact factor: 2.747

9.  A computational approach for identifying pathogenicity islands in prokaryotic genomes.

Authors:  Sung Ho Yoon; Cheol-Goo Hur; Ho-Young Kang; Yeoun Hee Kim; Tae Kwang Oh; Jihyun F Kim
Journal:  BMC Bioinformatics       Date:  2005-07-21       Impact factor: 3.169

10.  AutoFACT: an automatic functional annotation and classification tool.

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  29 in total

Review 1.  Probiogenomics as a tool to obtain genetic insights into adaptation of probiotic bacteria to the human gut.

Authors:  Marco Ventura; Francesca Turroni; Douwe van Sinderen
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Review 2.  Phylogenetic framework and molecular signatures for the main clades of the phylum Actinobacteria.

Authors:  Beile Gao; Radhey S Gupta
Journal:  Microbiol Mol Biol Rev       Date:  2012-03       Impact factor: 11.056

3.  Selection of a Bifidobacterium animalis subsp. lactis strain with a decreased ability to produce acetic acid.

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4.  Complete genome sequence of probiotic Bifidobacterium animalis subsp. lactis strain V9.

Authors:  Zhihong Sun; Xia Chen; Jicheng Wang; Pengfei Gao; Zhemin Zhou; Yi Ren; Tiansong Sun; Lei Wang; He Meng; Wei Chen; Heping Zhang
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5.  Bifidobacterium animalis subsp. lactis ATCC 27673 is a genomically unique strain within its conserved subspecies.

Authors:  Joseph R Loquasto; Rodolphe Barrangou; Edward G Dudley; Buffy Stahl; Chun Chen; Robert F Roberts
Journal:  Appl Environ Microbiol       Date:  2013-08-30       Impact factor: 4.792

6.  Milk and two oligosaccharides.

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Journal:  Nat Rev Microbiol       Date:  2009-07       Impact factor: 60.633

7.  Complete genome sequence of Bifidobacterium animalis subsp. lactis BB-12, a widely consumed probiotic strain.

Authors:  Christel Garrigues; Eric Johansen; Martin B Pedersen
Journal:  J Bacteriol       Date:  2010-02-26       Impact factor: 3.490

8.  Genome sequence of the probiotic strain Bifidobacterium animalis subsp. lactis CNCM I-2494.

Authors:  Christian Chervaux; Christine Grimaldi; Alexander Bolotin; Benoit Quinquis; Sophie Legrain-Raspaud; Johan E T van Hylckama Vlieg; Gerard Denariaz; Tamara Smokvina
Journal:  J Bacteriol       Date:  2011-10       Impact factor: 3.490

9.  Dissecting the Evolutionary Development of the Species Bifidobacterium animalis through Comparative Genomics Analyses.

Authors:  Gabriele Andrea Lugli; Walter Mancino; Christian Milani; Sabrina Duranti; Leonardo Mancabelli; Stefania Napoli; Marta Mangifesta; Alice Viappiani; Rosaria Anzalone; Giulia Longhi; Douwe van Sinderen; Marco Ventura; Francesca Turroni
Journal:  Appl Environ Microbiol       Date:  2019-03-22       Impact factor: 4.792

10.  Mixed-species genomic microarray analysis of fecal samples reveals differential transcriptional responses of bifidobacteria in breast- and formula-fed infants.

Authors:  Eline S Klaassens; Rolf J Boesten; Monique Haarman; Jan Knol; Frank H Schuren; Elaine E Vaughan; Willem M de Vos
Journal:  Appl Environ Microbiol       Date:  2009-03-13       Impact factor: 4.792
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