Literature DB >> 18999035

FMA-RadLex: An application ontology of radiological anatomy derived from the foundational model of anatomy reference ontology.

Jose L V Mejino1, Daniel L Rubin, James F Brinkley.   

Abstract

Domain reference ontologies are being developed to serve as generalizable and reusable sources designed to support any application specific to the domain. The challenge is how to develop ways to derive or adapt pertinent portions of reference ontologies into application ontologies. In this paper we demonstrate how a subset of anatomy relevant to the domain of radiology can be derived from an anatomy reference ontology, the Foundational Model of Anatomy (FMA) Ontology, to create an application ontology that is robust and expressive enough to incorporate and accommodate all salient anatomical knowledge necessary to support existing and emerging systems for managing anatomical information related to radiology. The principles underlying this work are applicable to domains beyond radiology, so our results could be extended to other areas of biomedicine in the future.

Entities:  

Mesh:

Year:  2008        PMID: 18999035      PMCID: PMC2656009     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  4 in total

1.  RadLex: a new method for indexing online educational materials.

Authors:  Curtis P Langlotz
Journal:  Radiographics       Date:  2006 Nov-Dec       Impact factor: 5.333

2.  Creating and curating a terminology for radiology: ontology modeling and analysis.

Authors:  Daniel L Rubin
Journal:  J Digit Imaging       Date:  2007-09-15       Impact factor: 4.056

3.  RadiO: a prototype application ontology for radiology reporting tasks.

Authors:  Dirk Marwede; Matthew Fielding; Thomas Kahn
Journal:  AMIA Annu Symp Proc       Date:  2007-10-11

4.  Relations in biomedical ontologies.

Authors:  Barry Smith; Werner Ceusters; Bert Klagges; Jacob Köhler; Anand Kumar; Jane Lomax; Chris Mungall; Fabian Neuhaus; Alan L Rector; Cornelius Rosse
Journal:  Genome Biol       Date:  2005-04-28       Impact factor: 13.583

  4 in total
  19 in total

1.  Effectiveness of lexico-syntactic pattern matching for ontology enrichment with clinical documents.

Authors:  K Liu; W W Chapman; G Savova; C G Chute; N Sioutos; R S Crowley
Journal:  Methods Inf Med       Date:  2010-11-08       Impact factor: 2.176

2.  Semantic annotation of 3D anatomical models to support diagnosis and follow-up analysis of musculoskeletal pathologies.

Authors:  Imon Banerjee; Chiara Eva Catalano; Giuseppe Patané; Michela Spagnuolo
Journal:  Int J Comput Assist Radiol Surg       Date:  2015-11-28       Impact factor: 2.924

3.  Ontology-based image navigation: exploring 3.0-T MR neurography of the brachial plexus using AIM and RadLex.

Authors:  Kenneth C Wang; Aditya R Salunkhe; James J Morrison; Pearlene P Lee; José L V Mejino; Landon T Detwiler; James F Brinkley; Eliot L Siegel; Daniel L Rubin; John A Carrino
Journal:  Radiographics       Date:  2015 Jan-Feb       Impact factor: 5.333

4.  Workflow Lexicons in Healthcare: Validation of the SWIM Lexicon.

Authors:  Chris Meenan; Bradley Erickson; Nancy Knight; Jewel Fossett; Elizabeth Olsen; Prerna Mohod; Joseph Chen; Steve G Langer
Journal:  J Digit Imaging       Date:  2017-06       Impact factor: 4.056

5.  Intelligent Word Embeddings of Free-Text Radiology Reports.

Authors:  Imon Banerjee; Sriraman Madhavan; Roger Eric Goldman; Daniel L Rubin
Journal:  AMIA Annu Symp Proc       Date:  2018-04-16

6.  [Current reporting in radiology : what will happen tomorrow?].

Authors:  T Baumann; T Hackländer; E Kotter
Journal:  Radiologe       Date:  2014-01       Impact factor: 0.635

7.  Identifying incidental findings from radiology reports of trauma patients: An evaluation of automated feature representation methods.

Authors:  Gaurav Trivedi; Charmgil Hong; Esmaeel R Dadashzadeh; Robert M Handzel; Harry Hochheiser; Shyam Visweswaran
Journal:  Int J Med Inform       Date:  2019-06-06       Impact factor: 4.046

8.  Terminology development towards harmonizing multiple clinical neuroimaging research repositories.

Authors:  Jessica A Turner; Danielle Pasquerello; Matthew D Turner; David B Keator; Kathryn Alpert; Margaret King; Drew Landis; Vince D Calhoun; Steven G Potkin; Marcelo Tallis; Jose Luis Ambite; Lei Wang
Journal:  Data Integr Life Sci       Date:  2015-07-08

9.  A Multiscale Deep Learning Method for Quantitative Visualization of Traumatic Hemoperitoneum at CT: Assessment of Feasibility and Comparison with Subjective Categorical Estimation.

Authors:  David Dreizin; Yuyin Zhou; Shuhao Fu; Yan Wang; Guang Li; Kathryn Champ; Eliot Siegel; Ze Wang; Tina Chen; Alan L Yuille
Journal:  Radiol Artif Intell       Date:  2020-11-11

10.  What is the abdomen? Rationalising clinical and anatomical perspectives using formal semantics.

Authors:  Philip J B Brown; Yongsheng Gao; David Clunie
Journal:  J Anat       Date:  2021-01-08       Impact factor: 2.610

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