Literature DB >> 26688838

Terminology development towards harmonizing multiple clinical neuroimaging research repositories.

Jessica A Turner1, Danielle Pasquerello2, Matthew D Turner3, David B Keator4, Kathryn Alpert5, Margaret King6, Drew Landis, Vince D Calhoun, Steven G Potkin, Marcelo Tallis, Jose Luis Ambite, Lei Wang.   

Abstract

Data sharing and mediation across disparate neuroimaging repositories requires extensive effort to ensure that the different domains of data types are referred to by commonly agreed upon terms. Within the SchizConnect project, which enables querying across decentralized databases of neuroimaging, clinical, and cognitive data from various studies of schizophrenia, we developed a model for each data domain, identified common usable terms that could be agreed upon across the repositories, and linked them to standard ontological terms where possible. We had the goal of facilitating both the current user experience in querying and future automated computations and reasoning regarding the data. We found that existing terminologies are incomplete for these purposes, even with the history of neuroimaging data sharing in the field; and we provide a model for efforts focused on querying multiple clinical neuroimaging repositories.

Entities:  

Keywords:  Neuroimaging; assessments; clinical scales; data sharing; mediation

Year:  2015        PMID: 26688838      PMCID: PMC4682911          DOI: 10.1007/978-3-319-21843-4_8

Source DB:  PubMed          Journal:  Data Integr Life Sci


  31 in total

Review 1.  Sharing heterogeneous data: the national database for autism research.

Authors:  Dan Hall; Michael F Huerta; Matthew J McAuliffe; Gregory K Farber
Journal:  Neuroinformatics       Date:  2012-10

Review 2.  Function biomedical informatics research network recommendations for prospective multicenter functional MRI studies.

Authors:  Gary H Glover; Bryon A Mueller; Jessica A Turner; Theo G M van Erp; Thomas T Liu; Douglas N Greve; James T Voyvodic; Jerod Rasmussen; Gregory G Brown; David B Keator; Vince D Calhoun; Hyo Jong Lee; Judith M Ford; Daniel H Mathalon; Michele Diaz; Daniel S O'Leary; Syam Gadde; Adrian Preda; Kelvin O Lim; Cynthia G Wible; Hal S Stern; Aysenil Belger; Gregory McCarthy; Burak Ozyurt; Steven G Potkin
Journal:  J Magn Reson Imaging       Date:  2012-02-07       Impact factor: 4.813

3.  The Extensible Neuroimaging Archive Toolkit: an informatics platform for managing, exploring, and sharing neuroimaging data.

Authors:  Daniel S Marcus; Timothy R Olsen; Mohana Ramaratnam; Randy L Buckner
Journal:  Neuroinformatics       Date:  2007

4.  The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience.

Authors:  William J Bug; Giorgio A Ascoli; Jeffrey S Grethe; Amarnath Gupta; Christine Fennema-Notestine; Angela R Laird; Stephen D Larson; Daniel Rubin; Gordon M Shepherd; Jessica A Turner; Maryann E Martone
Journal:  Neuroinformatics       Date:  2008-10-31

5.  Data federation in the Biomedical Informatics Research Network: tools for semantic annotation and query of distributed multiscale brain data.

Authors:  William Bug; Vadim Astahkov; Jyl Boline; Christine Fennema-Notestine; Jeffrey S Grethe; Amarnath Gupta; David N Kennedy; Daniel L Rubin; Brian Sanders; Jessica A Turner; Maryann E Martone
Journal:  AMIA Annu Symp Proc       Date:  2008-11-06

6.  Federated web-accessible clinical data management within an extensible neuroimaging database.

Authors:  I Burak Ozyurt; David B Keator; Dingying Wei; Christine Fennema-Notestine; Karen R Pease; Jeremy Bockholt; Jeffrey S Grethe
Journal:  Neuroinformatics       Date:  2010-12

7.  Toward an ontology-based framework for clinical research databases.

Authors:  Y Megan Kong; Carl Dahlke; Qun Xiang; Yu Qian; David Karp; Richard H Scheuermann
Journal:  J Biomed Inform       Date:  2010-05-10       Impact factor: 6.317

8.  Modeling biomedical experimental processes with OBI.

Authors:  Ryan R Brinkman; Mélanie Courtot; Dirk Derom; Jennifer M Fostel; Yongqun He; Phillip Lord; James Malone; Helen Parkinson; Bjoern Peters; Philippe Rocca-Serra; Alan Ruttenberg; Susanna-Assunta Sansone; Larisa N Soldatova; Christian J Stoeckert; Jessica A Turner; Jie Zheng
Journal:  J Biomed Semantics       Date:  2010-06-22

9.  Informatics and data mining tools and strategies for the human connectome project.

Authors:  Daniel S Marcus; John Harwell; Timothy Olsen; Michael Hodge; Matthew F Glasser; Fred Prior; Mark Jenkinson; Timothy Laumann; Sandra W Curtiss; David C Van Essen
Journal:  Front Neuroinform       Date:  2011-06-27       Impact factor: 4.081

10.  Automated collection of imaging and phenotypic data to centralized and distributed data repositories.

Authors:  Margaret D King; Dylan Wood; Brittny Miller; Ross Kelly; Drew Landis; William Courtney; Runtang Wang; Jessica A Turner; Vince D Calhoun
Journal:  Front Neuroinform       Date:  2014-06-05       Impact factor: 4.081

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  2 in total

1.  SchizConnect: Virtual Data Integration in Neuroimaging.

Authors:  Jose Luis Ambite; Marcelo Tallis; Kathryn Alpert; David B Keator; Margaret King; Drew Landis; George Konstantinidis; Vince D Calhoun; Steven G Potkin; Jessica A Turner; Lei Wang
Journal:  Data Integr Life Sci       Date:  2015-07-08

2.  ENIGMA + COINSTAC: Improving Findability, Accessibility, Interoperability, and Re-usability.

Authors:  Jessica A Turner; Vince D Calhoun; Paul M Thompson; Neda Jahanshad; Christopher R K Ching; Sophia I Thomopoulos; Eric Verner; Gregory P Strauss; Anthony O Ahmed; Matthew D Turner; Sunitha Basodi; Judith M Ford; Daniel H Mathalon; Adrian Preda; Aysenil Belger; Bryon A Mueller; Kelvin O Lim; Theo G M van Erp
Journal:  Neuroinformatics       Date:  2021-11-30
  2 in total

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