Literature DB >> 17874267

Creating and curating a terminology for radiology: ontology modeling and analysis.

Daniel L Rubin1.   

Abstract

The radiology community has recognized the need to create a standard terminology to improve the clarity of reports, to reduce radiologist variation, to enable access to imaging information, and to improve the quality of practice. This need has recently led to the development of RadLex, a controlled terminology for radiology. The creation of RadLex has proved challenging in several respects: It has been difficult for users to peruse the large RadLex taxonomies and for curators to navigate the complex terminology structure to check it for errors and omissions. In this work, we demonstrate that the RadLex terminology can be translated into an ontology, a representation of terminologies that is both human-browsable and machine-processable. We also show that creating this ontology permits computational analysis of RadLex and enables its use in a variety of computer applications. We believe that adopting an ontology representation of RadLex will permit more widespread use of the terminology and make it easier to collect feedback from the community that will ultimately lead to improving RadLex.

Entities:  

Mesh:

Year:  2007        PMID: 17874267      PMCID: PMC3043845          DOI: 10.1007/s10278-007-9073-0

Source DB:  PubMed          Journal:  J Digit Imaging        ISSN: 0897-1889            Impact factor:   4.056


  11 in total

1.  Evaluation of SNOMED3.5 in representing concepts in chest radiology reports: integration of a SNOMED mapper with a radiology reporting workstation.

Authors:  U Sinha; A Yaghmai; L Thompson; B Dai; R K Taira; J D Dionisio; H Kangarloo
Journal:  Proc AMIA Symp       Date:  2000

2.  CADMIUM II: acquisition and representation of radiological knowledge for computerized decision support in mammography.

Authors:  E Alberdi; P Taylor; R Lee; J Fox; M Sordo; A Todd-Pokropek
Journal:  Proc AMIA Symp       Date:  2000

3.  The Gene Ontology (GO) database and informatics resource.

Authors:  M A Harris; J Clark; A Ireland; J Lomax; M Ashburner; R Foulger; K Eilbeck; S Lewis; B Marshall; C Mungall; J Richter; G M Rubin; J A Blake; C Bult; M Dolan; H Drabkin; J T Eppig; D P Hill; L Ni; M Ringwald; R Balakrishnan; J M Cherry; K R Christie; M C Costanzo; S S Dwight; S Engel; D G Fisk; J E Hirschman; E L Hong; R S Nash; A Sethuraman; C L Theesfeld; D Botstein; K Dolinski; B Feierbach; T Berardini; S Mundodi; S Y Rhee; R Apweiler; D Barrell; E Camon; E Dimmer; V Lee; R Chisholm; P Gaudet; W Kibbe; R Kishore; E M Schwarz; P Sternberg; M Gwinn; L Hannick; J Wortman; M Berriman; V Wood; N de la Cruz; P Tonellato; P Jaiswal; T Seigfried; R White
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

4.  Evaluation of ontology development tools for bioinformatics.

Authors:  Patrick Lambrix; Manal Habbouche; Marta Pérez
Journal:  Bioinformatics       Date:  2003-08-12       Impact factor: 6.937

5.  The completeness of existing lexicons for representing radiology report information.

Authors:  Curtis P Langlotz; Susan A Caldwell
Journal:  J Digit Imaging       Date:  2002-03-21       Impact factor: 4.056

6.  An ontology for PACS integration.

Authors:  Charles E Kahn; David S Channin; Daniel L Rubin
Journal:  J Digit Imaging       Date:  2006-12       Impact factor: 4.056

7.  RadLex: a new method for indexing online educational materials.

Authors:  Curtis P Langlotz
Journal:  Radiographics       Date:  2006 Nov-Dec       Impact factor: 5.333

Review 8.  Radiology reporting, past, present, and future: the radiologist's perspective.

Authors:  Bruce I Reiner; Nancy Knight; Eliot L Siegel
Journal:  J Am Coll Radiol       Date:  2007-05       Impact factor: 5.532

9.  Expressiveness of the Breast Imaging Reporting and Database System (BI-RADS).

Authors:  J Starren; S M Johnson
Journal:  Proc AMIA Annu Fall Symp       Date:  1997

10.  Addressing the coming radiology crisis-the Society for Computer Applications in Radiology transforming the radiological interpretation process (TRIP) initiative.

Authors:  Katherine P Andriole; Richard L Morin; Ronald L Arenson; John A Carrino; Bradley J Erickson; Steven C Horii; David W Piraino; Bruce I Reiner; J Anthony Seibert; Eliot Siegel
Journal:  J Digit Imaging       Date:  2004-11-25       Impact factor: 4.056

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  56 in total

1.  Analysis of RadLex coverage and term co-occurrence in radiology reporting templates.

Authors:  Yi Hong; Jin Zhang; Marta E Heilbrun; Charles E Kahn
Journal:  J Digit Imaging       Date:  2012-02       Impact factor: 4.056

2.  An open-standards grammar for outline-style radiology report templates.

Authors:  Selen Bozkurt; Charles E Kahn
Journal:  J Digit Imaging       Date:  2012-06       Impact factor: 4.056

3.  Structured reporting using a shared indexed multilingual radiology lexicon.

Authors:  Roberto Stramare; Giuliano Scattolin; Valeria Beltrame; Marco Gerardi; Marco Sommavilla; Cristina Gatto; Paolo Mosca; Leopoldo Rubaltelli; Carlo Riccardo Rossi; Claudio Saccavini
Journal:  Int J Comput Assist Radiol Surg       Date:  2011-10-19       Impact factor: 2.924

4.  Imaging informatics: challenges in multi-site imaging trials.

Authors:  Steve Langer; Brian Bartholmai
Journal:  J Digit Imaging       Date:  2011-02       Impact factor: 4.056

Review 5.  Imaging informatics: essential tools for the delivery of imaging services.

Authors:  David S Mendelson; Daniel L Rubin
Journal:  Acad Radiol       Date:  2013-10       Impact factor: 3.173

6.  Automated semantic indexing of figure captions to improve radiology image retrieval.

Authors:  Charles E Kahn; Daniel L Rubin
Journal:  J Am Med Inform Assoc       Date:  2009-03-04       Impact factor: 4.497

7.  FMA-RadLex: An application ontology of radiological anatomy derived from the foundational model of anatomy reference ontology.

Authors:  Jose L V Mejino; Daniel L Rubin; James F Brinkley
Journal:  AMIA Annu Symp Proc       Date:  2008-11-06

8.  Analysis of CT features and quantitative texture analysis in patients with thymic tumors: correlation with grading and staging.

Authors:  Angelo Iannarelli; Beatrice Sacconi; Francesca Tomei; Marco Anile; Flavia Longo; Mario Bezzi; Alessandro Napoli; Luca Saba; Michele Anzidei; Giulia D'Ovidio; Roberto Scipione; Carlo Catalano
Journal:  Radiol Med       Date:  2018-01-06       Impact factor: 3.469

9.  Integration of imaging signs into RadLex.

Authors:  Matthew W Shore; Daniel L Rubin; Charles E Kahn
Journal:  J Digit Imaging       Date:  2012-02       Impact factor: 4.056

10.  Predicting visual semantic descriptive terms from radiological image data: preliminary results with liver lesions in CT.

Authors:  Adrien Depeursinge; Camille Kurtz; Christopher Beaulieu; Sandy Napel; Daniel Rubin
Journal:  IEEE Trans Med Imaging       Date:  2014-05-01       Impact factor: 10.048

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