Literature DB >> 18988747

Structural basis for membrane binding and catalytic activation of the peripheral membrane enzyme pyruvate oxidase from Escherichia coli.

Piotr Neumann1, Annett Weidner, Andreas Pech, Milton T Stubbs, Kai Tittmann.   

Abstract

The thiamin- and flavin-dependent peripheral membrane enzyme pyruvate oxidase from E. coli catalyzes the oxidative decarboxylation of the central metabolite pyruvate to CO(2) and acetate. Concomitant reduction of the enzyme-bound flavin triggers membrane binding of the C terminus and shuttling of 2 electrons to ubiquinone 8, a membrane-bound mobile carrier of the electron transport chain. Binding to the membrane in vivo or limited proteolysis in vitro stimulate the catalytic proficiency by 2 orders of magnitude. The molecular mechanisms by which membrane binding and activation are governed have remained enigmatic. Here, we present the X-ray crystal structures of the full-length enzyme and a proteolytically activated truncation variant lacking the last 23 C-terminal residues inferred as important in membrane binding. In conjunction with spectroscopic results, the structural data pinpoint a conformational rearrangement upon activation that exposes the autoinhibitory C terminus, thereby freeing the active site. In the activated enzyme, Phe-465 swings into the active site and wires both cofactors for efficient electron transfer. The isolated C terminus, which has no intrinsic helix propensity, folds into a helical structure in the presence of micelles.

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Year:  2008        PMID: 18988747      PMCID: PMC2582286          DOI: 10.1073/pnas.0805027105

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  48 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-20       Impact factor: 11.205

Review 2.  The role of electrostatics in protein-membrane interactions.

Authors:  Anna Mulgrew-Nesbitt; Karthikeyan Diraviyam; Jiyao Wang; Shaneen Singh; Paul Murray; Zhaohui Li; Laura Rogers; Nebojsa Mirkovic; Diana Murray
Journal:  Biochim Biophys Acta       Date:  2006-07-14

3.  Lipid activation and protease activation of pyruvate oxidase. Evidence suggesting a common site of interaction on the protein.

Authors:  P Russell; H L Schrock; R B Gennis
Journal:  J Biol Chem       Date:  1977-11-10       Impact factor: 5.157

4.  Characterization of the proteolytic activation of pyruvate oxidase. Control by specific ligands and by the flavin oxidation-reduction state.

Authors:  P Russell; L P Hager; R B Gennis
Journal:  J Biol Chem       Date:  1977-11-10       Impact factor: 5.157

5.  Crystalline pyruvate oxidase from Escherichia coli. II. Activation by phospholipids.

Authors:  C C Cunningham; L P Hager
Journal:  J Biol Chem       Date:  1971-03-25       Impact factor: 5.157

6.  Crystalline flavin pyruvate oxidase from Escherichia coli. I. Isolation and properties of the flavoprotein.

Authors:  F R Williams; L P Hager
Journal:  Arch Biochem Biophys       Date:  1966-09-26       Impact factor: 4.013

7.  Pyruvate oxidase contributes to the aerobic growth efficiency of Escherichia coli.

Authors:  A M Abdel-Hamid; M M Attwood; J R Guest
Journal:  Microbiology       Date:  2001-06       Impact factor: 2.777

8.  A molecular switch and proton wire synchronize the active sites in thiamine enzymes.

Authors:  René A W Frank; Christopher M Titman; J Venkatesh Pratap; Ben F Luisi; Richard N Perham
Journal:  Science       Date:  2004-10-29       Impact factor: 47.728

9.  Molecular cloning, DNA sequencing, and enzymatic analyses of two Escherichia coli pyruvate oxidase mutants defective in activation by lipids.

Authors:  Y Y Chang; J E Cronan
Journal:  J Bacteriol       Date:  1986-07       Impact factor: 3.490

10.  The refined structures of a stabilized mutant and of wild-type pyruvate oxidase from Lactobacillus plantarum.

Authors:  Y A Muller; G Schumacher; R Rudolph; G E Schulz
Journal:  J Mol Biol       Date:  1994-04-01       Impact factor: 5.469

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  19 in total

1.  Structural basis for autoinhibition of CTP:phosphocholine cytidylyltransferase (CCT), the regulatory enzyme in phosphatidylcholine synthesis, by its membrane-binding amphipathic helix.

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Journal:  J Biol Chem       Date:  2013-11-25       Impact factor: 5.157

2.  Phosphoenolpyruvate carboxylase from C4 leaves is selectively targeted for inhibition by anionic phospholipids.

Authors:  José A Monreal; Fionn McLoughlin; Cristina Echevarría; Sofía García-Mauriño; Christa Testerink
Journal:  Plant Physiol       Date:  2009-12-09       Impact factor: 8.340

3.  Crystal structure of a mammalian CTP: phosphocholine cytidylyltransferase catalytic domain reveals novel active site residues within a highly conserved nucleotidyltransferase fold.

Authors:  Jaeyong Lee; Joanne Johnson; Ziwei Ding; Mark Paetzel; Rosemary B Cornell
Journal:  J Biol Chem       Date:  2009-09-25       Impact factor: 5.157

Review 4.  PLP-dependent enzymes as entry and exit gates of sphingolipid metabolism.

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Journal:  Protein Sci       Date:  2011-09       Impact factor: 6.725

5.  Negatively charged lipid membranes promote a disorder-order transition in the Yersinia YscU protein.

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Journal:  Biophys J       Date:  2014-10-21       Impact factor: 4.033

Review 6.  Membrane enzymes: transformers at the interface.

Authors:  Florian Brodhun; Kai Tittmann
Journal:  Nat Chem Biol       Date:  2015-01-12       Impact factor: 15.040

7.  Observation of a stable carbene at the active site of a thiamin enzyme.

Authors:  Danilo Meyer; Piotr Neumann; Ralf Ficner; Kai Tittmann
Journal:  Nat Chem Biol       Date:  2013-06-09       Impact factor: 15.040

8.  Proteomic analysis of iron acquisition, metabolic and regulatory responses of Yersinia pestis to iron starvation.

Authors:  Rembert Pieper; Shih-Ting Huang; Prashanth P Parmar; David J Clark; Hamid Alami; Robert D Fleischmann; Robert D Perry; Scott N Peterson
Journal:  BMC Microbiol       Date:  2010-01-29       Impact factor: 3.605

9.  A 22-mer segment in the structurally pliable regulatory domain of metazoan CTP: phosphocholine cytidylyltransferase facilitates both silencing and activating functions.

Authors:  Ziwei Ding; Svetla G Taneva; Harris K H Huang; Stephanie A Campbell; Lucie Semenec; Nansheng Chen; Rosemary B Cornell
Journal:  J Biol Chem       Date:  2012-09-17       Impact factor: 5.157

Review 10.  Flavin redox switching of protein functions.

Authors:  Donald F Becker; Weidong Zhu; Michael A Moxley
Journal:  Antioxid Redox Signal       Date:  2010-10-28       Impact factor: 8.401

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