Literature DB >> 23748673

Observation of a stable carbene at the active site of a thiamin enzyme.

Danilo Meyer1, Piotr Neumann, Ralf Ficner, Kai Tittmann.   

Abstract

Carbenes are highly reactive chemical compounds that are exploited as ligands in organometallic chemistry and are powerful organic catalysts. They were postulated to occur as transient intermediates in enzymes, yet their existence in a biological system could never be demonstrated directly. We present spectroscopic and structural data of a thiamin enzyme in a noncovalent complex with substrate, which implicate accumulation of a stable carbene as a major resonance contributor to deprotonated thiamin.

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Year:  2013        PMID: 23748673     DOI: 10.1038/nchembio.1275

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  22 in total

1.  Stable Carbenes.

Authors:  Didier Bourissou; Olivier Guerret; François P. Gabbaï; Guy Bertrand
Journal:  Chem Rev       Date:  2000-01-12       Impact factor: 60.622

2.  Crystal structure of yeast acetohydroxyacid synthase: a target for herbicidal inhibitors.

Authors:  Siew Siew Pang; Ronald G Duggleby; Luke W Guddat
Journal:  J Mol Biol       Date:  2002-03-22       Impact factor: 5.469

3.  The 1',4'-iminopyrimidine tautomer of thiamin diphosphate is poised for catalysis in asymmetric active centers on enzymes.

Authors:  Natalia Nemeria; Sumit Chakraborty; Ahmet Baykal; Lioubov G Korotchkina; Mulchand S Patel; Frank Jordan
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-20       Impact factor: 11.205

4.  Activation of thiamin diphosphate and FAD in the phosphatedependent pyruvate oxidase from Lactobacillus plantarum.

Authors:  K Tittmann; D Proske; M Spinka; S Ghisla; R Rudolph; G Hübner; G Kern
Journal:  J Biol Chem       Date:  1998-05-22       Impact factor: 5.157

Review 5.  Thiamin diphosphate catalysis: enzymic and nonenzymic covalent intermediates.

Authors:  Ronald Kluger; Kai Tittmann
Journal:  Chem Rev       Date:  2008-05-21       Impact factor: 60.622

6.  Unexpected tautomeric equilibria of the carbanion-enamine intermediate in pyruvate oxidase highlight unrecognized chemical versatility of thiamin.

Authors:  Danilo Meyer; Piotr Neumann; Eline Koers; Hanno Sjuts; Stefan Lüdtke; George M Sheldrick; Ralf Ficner; Kai Tittmann
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-22       Impact factor: 11.205

Review 7.  Stable cyclic carbenes and related species beyond diaminocarbenes.

Authors:  Mohand Melaimi; Michèle Soleilhavoup; Guy Bertrand
Journal:  Angew Chem Int Ed Engl       Date:  2010-11-15       Impact factor: 15.336

8.  Solid-state nuclear magnetic resonance studies delineate the role of the protein in activation of both aromatic rings of thiamin.

Authors:  Anand Balakrishnan; Sivakumar Paramasivam; Sumit Chakraborty; Tatyana Polenova; Frank Jordan
Journal:  J Am Chem Soc       Date:  2011-12-09       Impact factor: 15.419

9.  Inhibition of thiamin diphosphate dependent enzymes by 3-deazathiamin diphosphate.

Authors:  Stéphane Mann; Concepcion Perez Melero; Dan Hawksley; Finian J Leeper
Journal:  Org Biomol Chem       Date:  2004-05-25       Impact factor: 3.876

10.  Structural insights into the prereaction state of pyruvate decarboxylase from Zymomonas mobilis .

Authors:  Xue-Yuan Pei; Karl M Erixon; Ben F Luisi; Finian J Leeper
Journal:  Biochemistry       Date:  2010-03-02       Impact factor: 3.162

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  13 in total

1.  Catalytic iron-carbene intermediate revealed in a cytochrome c carbene transferase.

Authors:  Russell D Lewis; Marc Garcia-Borràs; Matthew J Chalkley; Andrew R Buller; K N Houk; S B Jennifer Kan; Frances H Arnold
Journal:  Proc Natl Acad Sci U S A       Date:  2018-06-26       Impact factor: 11.205

2.  Single-step Replacement of an Unreactive C-H Bond by a C-S Bond Using Polysulfide as the Direct Sulfur Source in Anaerobic Ergothioneine Biosynthesis.

Authors:  Ronghai Cheng; Lian Wu; Rui Lai; Chao Peng; Nathchar Naowarojna; Weiyao Hu; Xinhao Li; Stephen A Whelan; Norman Lee; Juan Lopez; Changming Zhao; Youhua Yong; Jiahui Xue; Xuefeng Jiang; Mark W Grinstaff; Zixin Deng; Jiesheng Chen; Qiang Cui; Jiahai Zhou; Pinghua Liu
Journal:  ACS Catal       Date:  2020-07-16       Impact factor: 13.084

3.  Interfacing microbial styrene production with a biocompatible cyclopropanation reaction.

Authors:  Stephen Wallace; Emily P Balskus
Journal:  Angew Chem Int Ed Engl       Date:  2015-04-29       Impact factor: 15.336

Review 4.  Experimental observation of thiamin diphosphate-bound intermediates on enzymes and mechanistic information derived from these observations.

Authors:  Frank Jordan; Natalia S Nemeria
Journal:  Bioorg Chem       Date:  2005-04-01       Impact factor: 5.275

5.  Thiamin Diphosphate Activation in 1-Deoxy-d-xylulose 5-Phosphate Synthase: Insights into the Mechanism and Underlying Intermolecular Interactions.

Authors:  Justin K White; Sumit Handa; Sai Lakshmana Vankayala; David J Merkler; H Lee Woodcock
Journal:  J Phys Chem B       Date:  2016-09-12       Impact factor: 2.991

6.  Implications for an imidazol-2-yl carbene intermediate in the rhodanase-catalyzed C-S bond formation reaction of anaerobic ergothioneine biosynthesis.

Authors:  Ronghai Cheng; Rui Lai; Chao Peng; Juan Lopez; Zhihong Li; Nathchar Naowarojna; Kelin Li; Christina Wong; Norman Lee; Stephen A Whelan; Lu Qiao; Mark W Grinstaff; Jiangyun Wang; Qiang Cui; Pinghua Liu
Journal:  ACS Catal       Date:  2021-03-01       Impact factor: 13.084

7.  Preferential N-H⋯:C[double bond splayed right] hydrogen bonding involving ditopic NH-containing systems and N-heterocyclic carbenes.

Authors:  Zacharias J Kinney; Arnold L Rheingold; John D Protasiewicz
Journal:  RSC Adv       Date:  2020-11-20       Impact factor: 4.036

8.  Low-barrier hydrogen bonds in enzyme cooperativity.

Authors:  Shaobo Dai; Lisa-Marie Funk; Fabian Rabe von Pappenheim; Viktor Sautner; Mirko Paulikat; Benjamin Schröder; Jon Uranga; Ricardo A Mata; Kai Tittmann
Journal:  Nature       Date:  2019-09-18       Impact factor: 69.504

9.  Structure and functional characterization of pyruvate decarboxylase from Gluconacetobacter diazotrophicus.

Authors:  Leonardo J van Zyl; Wolf-Dieter Schubert; Marla I Tuffin; Don A Cowan
Journal:  BMC Struct Biol       Date:  2014-11-05

10.  Identification of charge transfer transitions related to thiamin-bound intermediates on enzymes provides a plethora of signatures useful in mechanistic studies.

Authors:  Hetalben Patel; Natalia S Nemeria; Forest H Andrews; Michael J McLeish; Frank Jordan
Journal:  Biochemistry       Date:  2014-03-26       Impact factor: 3.162

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