Literature DB >> 21028987

Flavin redox switching of protein functions.

Donald F Becker1, Weidong Zhu, Michael A Moxley.   

Abstract

Flavin cofactors impart remarkable catalytic diversity to enzymes, enabling them to participate in a broad array of biological processes. The properties of flavins also provide proteins with a versatile redox sensor that can be utilized for converting physiological signals such as cellular metabolism, light, and redox status into a unique functional output. The control of protein functions by the flavin redox state is important for transcriptional regulation, cell signaling pathways, and environmental adaptation. A significant number of proteins that have flavin redox switches are found in the Per-Arnt-Sim (PAS) domain family and include flavoproteins that act as photosensors and respond to changes in cellular redox conditions. Biochemical and structural studies of PAS domain flavoproteins have revealed key insights into how flavin redox changes are propagated to the surface of the protein and translated into a new functional output such as the binding of a target protein in a signaling pathway. Mechanistic details of proteins unrelated to the PAS domain are also emerging and provide novel examples of how the flavin redox state governs protein-membrane interactions in response to appropriate stimuli. Analysis of different flavin switch proteins reveals shared mechanistic themes for the regulation of protein structure and function by flavins.

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Year:  2010        PMID: 21028987      PMCID: PMC3113445          DOI: 10.1089/ars.2010.3417

Source DB:  PubMed          Journal:  Antioxid Redox Signal        ISSN: 1523-0864            Impact factor:   8.401


  91 in total

1.  Crystal structure of the bifunctional proline utilization A flavoenzyme from Bradyrhizobium japonicum.

Authors:  Dhiraj Srivastava; Jonathan P Schuermann; Tommi A White; Navasona Krishnan; Nikhilesh Sanyal; Greg L Hura; Anmin Tan; Michael T Henzl; Donald F Becker; John J Tanner
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-01       Impact factor: 11.205

2.  Membrane-bound proline dehydrogenase from Escherichia coli. Solubilization, purification, and characterization.

Authors:  R C Scarpulla; R L Soffer
Journal:  J Biol Chem       Date:  1978-09-10       Impact factor: 5.157

3.  Lipid activation and protease activation of pyruvate oxidase. Evidence suggesting a common site of interaction on the protein.

Authors:  P Russell; H L Schrock; R B Gennis
Journal:  J Biol Chem       Date:  1977-11-10       Impact factor: 5.157

4.  Characterization of the proteolytic activation of pyruvate oxidase. Control by specific ligands and by the flavin oxidation-reduction state.

Authors:  P Russell; L P Hager; R B Gennis
Journal:  J Biol Chem       Date:  1977-11-10       Impact factor: 5.157

5.  The structure of the proline utilization a proline dehydrogenase domain inactivated by N-propargylglycine provides insight into conformational changes induced by substrate binding and flavin reduction.

Authors:  Dhiraj Srivastava; Weidong Zhu; William H Johnson; Christian P Whitman; Donald F Becker; John J Tanner
Journal:  Biochemistry       Date:  2010-01-26       Impact factor: 3.162

6.  Isolation and characterization of the protease-activated form of pyruvate oxidase. Evidence for a conformational change in the environment of the flavin prosthetic group.

Authors:  M A Recny; L P Hager
Journal:  J Biol Chem       Date:  1983-04-25       Impact factor: 5.157

7.  Quaternary structure changes in a second Per-Arnt-Sim domain mediate intramolecular redox signal relay in the NifL regulatory protein.

Authors:  Peter Slavny; Richard Little; Paloma Salinas; Thomas A Clarke; Ray Dixon
Journal:  Mol Microbiol       Date:  2009-11-10       Impact factor: 3.501

8.  A flavin cofactor-binding PAS domain regulates c-di-GMP synthesis in AxDGC2 from Acetobacter xylinum.

Authors:  Yaning Qi; Feng Rao; Zhen Luo; Zhao-Xun Liang
Journal:  Biochemistry       Date:  2009-11-03       Impact factor: 3.162

9.  Purification of the putA gene product. A bifunctional membrane-bound protein from Salmonella typhimurium responsible for the two-step oxidation of proline to glutamate.

Authors:  R Menzel; J Roth
Journal:  J Biol Chem       Date:  1981-09-25       Impact factor: 5.157

10.  Proline dehydrogenase from Escherichia coli K12. Properties of the membrane-associated enzyme.

Authors:  J L Abrahamson; L G Baker; J T Stephenson; J M Wood
Journal:  Eur J Biochem       Date:  1983-07-15
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  20 in total

1.  Rapid reaction kinetics of proline dehydrogenase in the multifunctional proline utilization A protein.

Authors:  Michael A Moxley; Donald F Becker
Journal:  Biochemistry       Date:  2011-12-15       Impact factor: 3.162

2.  Crystal structures of Trypanosoma cruzi UDP-galactopyranose mutase implicate flexibility of the histidine loop in enzyme activation.

Authors:  Richa Dhatwalia; Harkewal Singh; Michelle Oppenheimer; Pablo Sobrado; John J Tanner
Journal:  Biochemistry       Date:  2012-06-05       Impact factor: 3.162

Review 3.  Structure, function, and mechanism of proline utilization A (PutA).

Authors:  Li-Kai Liu; Donald F Becker; John J Tanner
Journal:  Arch Biochem Biophys       Date:  2017-07-14       Impact factor: 4.013

4.  Evidence for hysteretic substrate channeling in the proline dehydrogenase and Δ1-pyrroline-5-carboxylate dehydrogenase coupled reaction of proline utilization A (PutA).

Authors:  Michael A Moxley; Nikhilesh Sanyal; Navasona Krishnan; John J Tanner; Donald F Becker
Journal:  J Biol Chem       Date:  2013-12-18       Impact factor: 5.157

Review 5.  Thiol/Disulfide redox switches in the regulation of heme binding to proteins.

Authors:  Stephen W Ragsdale; Li Yi
Journal:  Antioxid Redox Signal       Date:  2010-12-27       Impact factor: 8.401

6.  Single-molecule experiments reveal the flexibility of a Per-ARNT-Sim domain and the kinetic partitioning in the unfolding pathway under force.

Authors:  Xiang Gao; Meng Qin; Puguang Yin; Junyi Liang; Jun Wang; Yi Cao; Wei Wang
Journal:  Biophys J       Date:  2012-05-02       Impact factor: 4.033

7.  Redox Modulation of Oligomeric State in Proline Utilization A.

Authors:  David A Korasick; Ashley C Campbell; Shelbi L Christgen; Srinivas Chakravarthy; Tommi A White; Donald F Becker; John J Tanner
Journal:  Biophys J       Date:  2018-06-19       Impact factor: 4.033

Review 8.  Structure, mechanism, and dynamics of UDP-galactopyranose mutase.

Authors:  John J Tanner; Leonardo Boechi; J Andrew McCammon; Pablo Sobrado
Journal:  Arch Biochem Biophys       Date:  2013-10-03       Impact factor: 4.013

9.  Crystal structures and kinetics of monofunctional proline dehydrogenase provide insight into substrate recognition and conformational changes associated with flavin reduction and product release.

Authors:  Min Luo; Benjamin W Arentson; Dhiraj Srivastava; Donald F Becker; John J Tanner
Journal:  Biochemistry       Date:  2012-12-05       Impact factor: 3.162

10.  Chloroquine binding reveals flavin redox switch function of quinone reductase 2.

Authors:  Kevin K K Leung; Brian H Shilton
Journal:  J Biol Chem       Date:  2013-03-07       Impact factor: 5.157

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