Literature DB >> 18977755

Nonenzymatic RNA ligation in water.

Samanta Pino1, Fabiana Ciciriello, Giovanna Costanzo, Ernesto Di Mauro.   

Abstract

We describe the nonenzymatic ligation of RNA oligomers in water. Dimers and tetramers are formed in a time-, pH-, and temperature-dependent reaction. Ligation efficiency depends on oligonucleotide length and sequence and is strongly enhanced by adenine-based nucleotide cofactors. Ligation of short RNA fragments could have liberated the prebiotic polymerization systems from the thermodynamically demanding task of reaching a (pre)genetically meaningful size by stepwise addition of one precursor monomer at the time.

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Year:  2008        PMID: 18977755      PMCID: PMC2662306          DOI: 10.1074/jbc.M805333200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  37 in total

1.  Relationship between internucleotide linkage geometry and the stability of RNA.

Authors:  G A Soukup; R R Breaker
Journal:  RNA       Date:  1999-10       Impact factor: 4.942

2.  Adenine-aptamer complexes: a bipartite RNA site that binds the adenine nucleic base.

Authors:  Marc Meli; Jacques Vergne; Jean-Luc Décout; Marie-Christine Maurel
Journal:  J Biol Chem       Date:  2001-11-08       Impact factor: 5.157

Review 3.  The structure of telomeric DNA.

Authors:  Stephen Neidle; Gary N Parkinson
Journal:  Curr Opin Struct Biol       Date:  2003-06       Impact factor: 6.809

4.  A self-replicating ligase ribozyme.

Authors:  Natasha Paul; Gerald F Joyce
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-18       Impact factor: 11.205

5.  A ribozyme composed of only two different nucleotides.

Authors:  John S Reader; Gerald F Joyce
Journal:  Nature       Date:  2002 Dec 19-26       Impact factor: 49.962

6.  Enzymatic behavior by intercalating molecules in a template-directed ligation reaction.

Authors:  Swapan S Jain; Frank A L Anet; Christopher J Stahle; Nicholas V Hud
Journal:  Angew Chem Int Ed Engl       Date:  2004-04-02       Impact factor: 15.336

7.  The effect of cytidine on the structure and function of an RNA ligase ribozyme.

Authors:  J Rogers; G F Joyce
Journal:  RNA       Date:  2001-03       Impact factor: 4.942

8.  Purification, cloning, and characterization of XendoU, a novel endoribonuclease involved in processing of intron-encoded small nucleolar RNAs in Xenopus laevis.

Authors:  Pietro Laneve; Fabio Altieri; Micol E Fiori; Andrea Scaloni; Irene Bozzoni; Elisa Caffarelli
Journal:  J Biol Chem       Date:  2003-02-05       Impact factor: 5.157

9.  In vitro selection of adenine-dependent hairpin ribozymes.

Authors:  Marc Meli; Jacques Vergne; Marie-Christine Maurel
Journal:  J Biol Chem       Date:  2003-01-07       Impact factor: 5.157

Review 10.  Prebiotic chemistry and the origin of the RNA world.

Authors:  Leslie E Orgel
Journal:  Crit Rev Biochem Mol Biol       Date:  2004 Mar-Apr       Impact factor: 8.250

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  14 in total

Review 1.  The role of natural selection in the origin of life.

Authors:  Iris Fry
Journal:  Orig Life Evol Biosph       Date:  2010-04-21       Impact factor: 1.950

2.  Potential pitfalls in MALDI-TOF MS analysis of abiotically synthesized RNA oligonucleotides.

Authors:  Bradley T Burcar; Lauren M Cassidy; Elizabeth M Moriarty; Prakash C Joshi; Kristin M Coari; Linda B McGown
Journal:  Orig Life Evol Biosph       Date:  2013-06-22       Impact factor: 1.950

3.  May cyclic nucleotides be a source for abiotic RNA synthesis?

Authors:  Giovanna Costanzo; Samanta Pino; Giorgia Botta; Raffaele Saladino; Ernesto Di Mauro
Journal:  Orig Life Evol Biosph       Date:  2011-12-03       Impact factor: 1.950

4.  The innate immune DNA sensor cGAS produces a noncanonical cyclic dinucleotide that activates human STING.

Authors:  Elie J Diner; Dara L Burdette; Stephen C Wilson; Kathryn M Monroe; Colleen A Kellenberger; Mamoru Hyodo; Yoshihiro Hayakawa; Ming C Hammond; Russell E Vance
Journal:  Cell Rep       Date:  2013-05-23       Impact factor: 9.423

5.  Generation of long RNA chains in water.

Authors:  Giovanna Costanzo; Samanta Pino; Fabiana Ciciriello; Ernesto Di Mauro
Journal:  J Biol Chem       Date:  2009-10-02       Impact factor: 5.157

6.  Quadruplex World.

Authors:  Besik Kankia
Journal:  Orig Life Evol Biosph       Date:  2021-07-02       Impact factor: 1.950

7.  A vestige of a prebiotic bonding machine is functioning within the contemporary ribosome.

Authors:  Miri Krupkin; Donna Matzov; Hua Tang; Markus Metz; Rinat Kalaora; Matthew J Belousoff; Ella Zimmerman; Anat Bashan; Ada Yonath
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2011-10-27       Impact factor: 6.237

Review 8.  Synergism and mutualism in non-enzymatic RNA polymerization.

Authors:  Hussein Kaddour; Nita Sahai
Journal:  Life (Basel)       Date:  2014-11-03

9.  Copying of RNA Sequences without Pre-Activation.

Authors:  Mario Jauker; Helmut Griesser; Clemens Richert
Journal:  Angew Chem Int Ed Engl       Date:  2015-10-05       Impact factor: 15.336

10.  Non-enzymatic template-directed recombination of RNAs.

Authors:  Sergey Y Nechaev; Alexei V Lutay; Valentin V Vlassov; Marina A Zenkova
Journal:  Int J Mol Sci       Date:  2009-04-21       Impact factor: 6.208

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