Literature DB >> 34213704

Quadruplex World.

Besik Kankia1,2.   

Abstract

The RNA world hypothesis relies on the double-helix complementarity principle for both replication and catalytic activity of RNA. However, the de novo appearance of the complementarity rules, without previous evolution steps, is doubtful. Another major problem of the RNA world is its isolated nature, making it almost impossible to accommodate the genetic code and transform it into modern biochemistry. These and many other unanswered questions of the RNA world led to suggestions that some simpler molecules must have preceded RNA. Most of these alternative hypotheses proposed the double-helical polymers with different backbones but used the same complementarity principle. The current paper describes a fundamentally different idea: the de novo appearance of a nucleic acid polymer without any preexisting rules or requirements. This approach, coined as the quadruplex world hypothesis, is based on (i) the ability of guanines to form stable G-tetrads that facilitate polymerization; and (ii) the unique property of polyguanines to fold into a monomolecular tetrahelix with a strictly defined building pattern and tertiary structure. The tetrahelix is capable of high-affinity intermolecular interactions and catalytic activities. The quadruplex world hypothesis has the potential to address almost all the shortcomings of the RNA world.

Entities:  

Keywords:  G-tetrad; Genetic code; Homochirality; Origin of life; Prebiotic; Quadruplex; RNA world; Tetrahelix

Year:  2021        PMID: 34213704     DOI: 10.1007/s11084-021-09611-6

Source DB:  PubMed          Journal:  Orig Life Evol Biosph        ISSN: 0169-6149            Impact factor:   1.950


  41 in total

Review 1.  RNA: prebiotic product, or biotic invention?

Authors:  Carole Anastasi; Fabien F Buchet; Michael A Crowe; Alastair L Parkes; Matthew W Powner; James M Smith; John D Sutherland
Journal:  Chem Biodivers       Date:  2007-04       Impact factor: 2.408

2.  Chemistry and the missing era of evolution.

Authors:  A Graham Cairns-Smith
Journal:  Chemistry       Date:  2008       Impact factor: 5.236

3.  Takeover mechanisms and early biochemical evolution.

Authors:  A G Cairns-Smith
Journal:  Biosystems       Date:  1977-09       Impact factor: 1.973

Review 4.  The ribosome challenge to the RNA world.

Authors:  Jessica C Bowman; Nicholas V Hud; Loren Dean Williams
Journal:  J Mol Evol       Date:  2015-03-05       Impact factor: 2.395

5.  RNA-DNA Chimeras in the Context of an RNA World Transition to an RNA/DNA World.

Authors:  Jesse V Gavette; Matthias Stoop; Nicholas V Hud; Ramanarayanan Krishnamurthy
Journal:  Angew Chem Int Ed Engl       Date:  2016-10-10       Impact factor: 15.336

6.  Synthesis of long prebiotic oligomers on mineral surfaces.

Authors:  J P Ferris; A R Hill; R Liu; L E Orgel
Journal:  Nature       Date:  1996-05-02       Impact factor: 49.962

Review 7.  Bioenergetics and life's origins.

Authors:  David Deamer; Arthur L Weber
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-02       Impact factor: 10.005

8.  Generation of long RNA chains in water.

Authors:  Giovanna Costanzo; Samanta Pino; Fabiana Ciciriello; Ernesto Di Mauro
Journal:  J Biol Chem       Date:  2009-10-02       Impact factor: 5.157

Review 9.  RNA G-Quadruplexes in Biology: Principles and Molecular Mechanisms.

Authors:  Marta M Fay; Shawn M Lyons; Pavel Ivanov
Journal:  J Mol Biol       Date:  2017-05-26       Impact factor: 5.469

10.  Stacking of G-quadruplexes: NMR structure of a G-rich oligonucleotide with potential anti-HIV and anticancer activity.

Authors:  Ngoc Quang Do; Kah Wai Lim; Ming Hoon Teo; Brahim Heddi; Anh Tuân Phan
Journal:  Nucleic Acids Res       Date:  2011-08-12       Impact factor: 16.971

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  3 in total

1.  Trinity of G-tetrads and origin of translation.

Authors:  Besik Kankia
Journal:  Biol Direct       Date:  2022-05-31       Impact factor: 7.173

2.  Structure of Tetrahelical DNA Homopolymers Supports Quadruplex World Hypothesis.

Authors:  Levan Lomidze; Mengkun Yang; David Khutsishvili; Nunu Metreveli; Karin Musier-Forsyth; Besik Kankia
Journal:  ACS Omega       Date:  2022-01-26

3.  ONQUADRO: a database of experimentally determined quadruplex structures.

Authors:  Tomasz Zok; Natalia Kraszewska; Joanna Miskiewicz; Paulina Pielacinska; Michal Zurkowski; Marta Szachniuk
Journal:  Nucleic Acids Res       Date:  2022-01-07       Impact factor: 16.971

  3 in total

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