Literature DB >> 18975918

Promiscuous sulfatase activity and thio-effects in a phosphodiesterase of the alkaline phosphatase superfamily.

Jonathan K Lassila1, Daniel Herschlag.   

Abstract

The nucleotide phosphodiesterase/pyrophosphatase from Xanthomonas axonopodis (NPP) is a structural and evolutionary relative of alkaline phosphatase that preferentially hydrolyzes phosphate diesters. With the goal of understanding how these two enzymes with nearly identical Zn(2+) bimetallo sites achieve high selectivity for hydrolysis of either phosphate monoesters or diesters, we have measured a promiscuous sulfatase activity in NPP. Sulfate esters are nearly isosteric with phosphate esters but carry less charge, offering a probe of electrostatic contributions to selectivity. NPP exhibits sulfatase activity with k(cat)/K(M) value of 2 x 10(-5) M(-1) s(-1), similar to the R166S mutant of alkaline phosphatase. We further report the effects of thio-substitution on phosphate monoester and diester reactions. Reactivities with these noncognate substrates illustrate a reduced dependence of NPP reactivity on the charge of the nonbridging oxygen situated between the Zn(2+) ions relative to that in alkaline phosphatase. This reduced charge dependence can explain about 10(2) of the 10(7)-fold differential catalytic proficiency for the most similar monoester and diester substrates in the two enzymes. The results further suggest that active site contacts to substrate oxygen atoms that do not contact the Zn(2+) ions may play an important role in defining the selectivity of the enzymes.

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Year:  2008        PMID: 18975918      PMCID: PMC2662379          DOI: 10.1021/bi801488c

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  28 in total

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Authors:  J A Gerlt; P C Babbitt
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2.  Functional interrelationships in the alkaline phosphatase superfamily: phosphodiesterase activity of Escherichia coli alkaline phosphatase.

Authors:  P J O'Brien; D Herschlag
Journal:  Biochemistry       Date:  2001-05-15       Impact factor: 3.162

Review 3.  Enzymatic mechanisms of phosphate and sulfate transfer.

Authors:  W Wallace Cleland; Alvan C Hengge
Journal:  Chem Rev       Date:  2006-08       Impact factor: 60.622

4.  Catalysis of the hydrolysis of phosphorylated pyridines by alkaline phosphatase has little or no dependence on the pKa of the leaving group.

Authors:  B I Labow; D Herschlag; W P Jencks
Journal:  Biochemistry       Date:  1993-08-31       Impact factor: 3.162

5.  Alkaline phosphatase is an almost perfect enzyme.

Authors:  T T Simopoulos; W P Jencks
Journal:  Biochemistry       Date:  1994-08-30       Impact factor: 3.162

Review 6.  Enzyme recruitment in evolution of new function.

Authors:  R A Jensen
Journal:  Annu Rev Microbiol       Date:  1976       Impact factor: 15.500

7.  Reaction mechanism of alkaline phosphatase based on crystal structures. Two-metal ion catalysis.

Authors:  E E Kim; H W Wyckoff
Journal:  J Mol Biol       Date:  1991-03-20       Impact factor: 5.469

Review 8.  Structure and mechanism of alkaline phosphatase.

Authors:  J E Coleman
Journal:  Annu Rev Biophys Biomol Struct       Date:  1992

9.  Arginine coordination in enzymatic phosphoryl transfer: evaluation of the effect of Arg166 mutations in Escherichia coli alkaline phosphatase.

Authors:  Patrick J O'Brien; Jonathan Kyle Lassila; Timothy D Fenn; Jesse G Zalatan; Daniel Herschlag
Journal:  Biochemistry       Date:  2008-07-22       Impact factor: 3.162

10.  Nucleotide pyrophosphatase/phosphodiesterase 1 is responsible for degradation of antisense phosphorothioate oligonucleotides.

Authors:  Marzena Wójcik; Marcin Cieślak; Wojciech J Stec; James W Goding; Maria Koziołkiewicz
Journal:  Oligonucleotides       Date:  2007
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  21 in total

Review 1.  Biological phosphoryl-transfer reactions: understanding mechanism and catalysis.

Authors:  Jonathan K Lassila; Jesse G Zalatan; Daniel Herschlag
Journal:  Annu Rev Biochem       Date:  2011       Impact factor: 23.643

Review 2.  Enzymatic transition states, transition-state analogs, dynamics, thermodynamics, and lifetimes.

Authors:  Vern L Schramm
Journal:  Annu Rev Biochem       Date:  2011       Impact factor: 23.643

3.  An efficient, multiply promiscuous hydrolase in the alkaline phosphatase superfamily.

Authors:  Bert van Loo; Stefanie Jonas; Ann C Babtie; Alhosna Benjdia; Olivier Berteau; Marko Hyvönen; Florian Hollfelder
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-27       Impact factor: 11.205

4.  High-resolution analysis of Zn(2+) coordination in the alkaline phosphatase superfamily by EXAFS and x-ray crystallography.

Authors:  Elena Bobyr; Jonathan K Lassila; Helen I Wiersma-Koch; Timothy D Fenn; Jason J Lee; Ivana Nikolic-Hughes; Keith O Hodgson; Douglas C Rees; Britt Hedman; Daniel Herschlag
Journal:  J Mol Biol       Date:  2011-10-28       Impact factor: 5.469

5.  Structural and mechanistic insights into C-P bond hydrolysis by phosphonoacetate hydrolase.

Authors:  Vinayak Agarwal; Svetlana A Borisova; William W Metcalf; Wilfred A van der Donk; Satish K Nair
Journal:  Chem Biol       Date:  2011-10-28

6.  Differential catalytic promiscuity of the alkaline phosphatase superfamily bimetallo core reveals mechanistic features underlying enzyme evolution.

Authors:  Fanny Sunden; Ishraq AlSadhan; Artem Lyubimov; Tzanko Doukov; Jeffrey Swan; Daniel Herschlag
Journal:  J Biol Chem       Date:  2017-10-25       Impact factor: 5.157

7.  Short and simple sequences favored the emergence of N-helix phospho-ligand binding sites in the first enzymes.

Authors:  Liam M Longo; Dušan Petrović; Shina Caroline Lynn Kamerlin; Dan S Tawfik
Journal:  Proc Natl Acad Sci U S A       Date:  2020-02-20       Impact factor: 11.205

8.  Differences in the Nature of the Phosphoryl Transfer Transition State in Protein Phosphatase 1 and Alkaline Phosphatase: Insights from QM Cluster Models.

Authors:  Rui Lai; Qiang Cui
Journal:  J Phys Chem B       Date:  2020-10-08       Impact factor: 2.991

9.  Divergence of chemical function in the alkaline phosphatase superfamily: structure and mechanism of the P-C bond cleaving enzyme phosphonoacetate hydrolase.

Authors:  Alexander Kim; Matthew M Benning; Sang OkLee; John Quinn; Brian M Martin; Hazel M Holden; Debra Dunaway-Mariano
Journal:  Biochemistry       Date:  2011-04-08       Impact factor: 3.162

Review 10.  Why nature really chose phosphate.

Authors:  Shina C L Kamerlin; Pankaz K Sharma; Ram B Prasad; Arieh Warshel
Journal:  Q Rev Biophys       Date:  2013-01-15       Impact factor: 5.318

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