Literature DB >> 20133613

An efficient, multiply promiscuous hydrolase in the alkaline phosphatase superfamily.

Bert van Loo1, Stefanie Jonas, Ann C Babtie, Alhosna Benjdia, Olivier Berteau, Marko Hyvönen, Florian Hollfelder.   

Abstract

We report a catalytically promiscuous enzyme able to efficiently promote the hydrolysis of six different substrate classes. Originally assigned as a phosphonate monoester hydrolase (PMH) this enzyme exhibits substantial second-order rate accelerations ((k(cat)/K(M))/k(w)), ranging from 10(7) to as high as 10(19), for the hydrolyses of phosphate mono-, di-, and triesters, phosphonate monoesters, sulfate monoesters, and sulfonate monoesters. This substrate collection encompasses a range of substrate charges between 0 and -2, transition states of a different nature, and involves attack at two different reaction centers (P and S). Intrinsic reactivities (half-lives) range from 200 days to 10(5) years under near neutrality. The substantial rate accelerations for a set of relatively difficult reactions suggest that efficient catalysis is not necessarily limited to efficient stabilization of just one transition state. The crystal structure of PMH identifies it as a member of the alkaline phosphatase superfamily. PMH encompasses four of the native activities previously observed in this superfamily and extends its repertoire by two further activities, one of which, sulfonate monoesterase, has not been observed previously for a natural enzyme. PMH is thus one of the most promiscuous hydrolases described to date. The functional links between superfamily activities can be presumed to have played a role in functional evolution by gene duplication.

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Year:  2010        PMID: 20133613      PMCID: PMC2840280          DOI: 10.1073/pnas.0903951107

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  32 in total

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Authors:  P J O'Brien; D Herschlag
Journal:  Biochemistry       Date:  2001-05-15       Impact factor: 3.162

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Review 3.  Evolution of enzyme superfamilies.

Authors:  Margaret E Glasner; John A Gerlt; Patricia C Babbitt
Journal:  Curr Opin Chem Biol       Date:  2006-08-28       Impact factor: 8.822

4.  Efficient catalytic promiscuity for chemically distinct reactions.

Authors:  Ann C Babtie; Subhajit Bandyopadhyay; Luis F Olguin; Florian Hollfelder
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

5.  A new member of the alkaline phosphatase superfamily with a formylglycine nucleophile: structural and kinetic characterisation of a phosphonate monoester hydrolase/phosphodiesterase from Rhizobium leguminosarum.

Authors:  Stefanie Jonas; Bert van Loo; Marko Hyvönen; Florian Hollfelder
Journal:  J Mol Biol       Date:  2008-09-04       Impact factor: 5.469

Review 6.  Enzyme recruitment in evolution of new function.

Authors:  R A Jensen
Journal:  Annu Rev Microbiol       Date:  1976       Impact factor: 15.500

Review 7.  Sulfatases: structure, mechanism, biological activity, inhibition, and synthetic utility.

Authors:  Sarah R Hanson; Michael D Best; Chi-Huey Wong
Journal:  Angew Chem Int Ed Engl       Date:  2004-11-05       Impact factor: 15.336

8.  A study in molecular contingency: glutamine phosphoribosylpyrophosphate amidotransferase is a promiscuous and evolvable phosphoribosylanthranilate isomerase.

Authors:  Wayne M Patrick; Ichiro Matsumura
Journal:  J Mol Biol       Date:  2008-01-26       Impact factor: 5.469

9.  Growth of Escherichia coli coexpressing phosphotriesterase and glycerophosphodiester phosphodiesterase, using paraoxon as the sole phosphorus source.

Authors:  Sean Yu McLoughlin; Colin Jackson; Jian-Wei Liu; David L Ollis
Journal:  Appl Environ Microbiol       Date:  2004-01       Impact factor: 4.792

10.  Identification of formylglycine in sulfatases by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry.

Authors:  Jianhe Peng; Bernhard Schmidt; Kurt von Figura; Thomas Dierks
Journal:  J Mass Spectrom       Date:  2003-01       Impact factor: 1.982

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  39 in total

1.  The Streptomyces-produced antibiotic fosfomycin is a promiscuous substrate for archaeal isopentenyl phosphate kinase.

Authors:  Mark F Mabanglo; Adrian W R Serohijos; C Dale Poulter
Journal:  Biochemistry       Date:  2012-01-11       Impact factor: 3.162

2.  Structure of a lipid A phosphoethanolamine transferase suggests how conformational changes govern substrate binding.

Authors:  Anandhi Anandan; Genevieve L Evans; Karmen Condic-Jurkic; Megan L O'Mara; Constance M John; Nancy J Phillips; Gary A Jarvis; Siobhan S Wills; Keith A Stubbs; Isabel Moraes; Charlene M Kahler; Alice Vrielink
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-13       Impact factor: 11.205

3.  Enzyme sub-functionalization driven by regulation.

Authors:  Bert van Loo; Erich Bornberg-Bauer
Journal:  EMBO Rep       Date:  2017-06-14       Impact factor: 8.807

4.  Model-driven discovery of underground metabolic functions in Escherichia coli.

Authors:  Gabriela I Guzmán; José Utrilla; Sergey Nurk; Elizabeth Brunk; Jonathan M Monk; Ali Ebrahim; Bernhard O Palsson; Adam M Feist
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-06       Impact factor: 11.205

Review 5.  Enzyme promiscuity: engine of evolutionary innovation.

Authors:  Chetanya Pandya; Jeremiah D Farelli; Debra Dunaway-Mariano; Karen N Allen
Journal:  J Biol Chem       Date:  2014-09-10       Impact factor: 5.157

6.  Differential catalytic promiscuity of the alkaline phosphatase superfamily bimetallo core reveals mechanistic features underlying enzyme evolution.

Authors:  Fanny Sunden; Ishraq AlSadhan; Artem Lyubimov; Tzanko Doukov; Jeffrey Swan; Daniel Herschlag
Journal:  J Biol Chem       Date:  2017-10-25       Impact factor: 5.157

Review 7.  Why nature really chose phosphate.

Authors:  Shina C L Kamerlin; Pankaz K Sharma; Ram B Prasad; Arieh Warshel
Journal:  Q Rev Biophys       Date:  2013-01-15       Impact factor: 5.318

8.  Facilitating the Evolution of Esterase Activity from a Promiscuous Enzyme (Mhg) with Catalytic Functions of Amide Hydrolysis and Carboxylic Acid Perhydrolysis by Engineering the Substrate Entrance Tunnel.

Authors:  Xiaodan Yan; Jianjun Wang; Yu Sun; Junge Zhu; Sheng Wu
Journal:  Appl Environ Microbiol       Date:  2016-10-27       Impact factor: 4.792

9.  Escherichia coli D-malate dehydrogenase, a generalist enzyme active in the leucine biosynthesis pathway.

Authors:  Anastassia A Vorobieva; Mohammad Shahneawz Khan; Patrice Soumillion
Journal:  J Biol Chem       Date:  2014-08-26       Impact factor: 5.157

10.  Site-directed mutagenesis maps interactions that enhance cognate and limit promiscuous catalysis by an alkaline phosphatase superfamily phosphodiesterase.

Authors:  Helen Wiersma-Koch; Fanny Sunden; Daniel Herschlag
Journal:  Biochemistry       Date:  2013-12-11       Impact factor: 3.162

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