Literature DB >> 8068674

Alkaline phosphatase is an almost perfect enzyme.

T T Simopoulos1, W P Jencks.   

Abstract

The second-order rate constant, kcat/km, for catalysis of the hydrolysis of 4-nitrophenyl phosphate by alkaline phosphatase decreases with increasing viscosity in the presence of sucrose or arabinose, with a slope of delta[kcat/Km)0/(kcat/Km)]/delta(eta/eta 0) = 1.4 at pH 8.0, 25 degrees C. This is consistent with rate-limiting diffusional encounter of the substrate with active enzyme and indicates that alkaline phosphatase is a "perfect enzyme". However, the reported second-order rate constants of kcat/Km = 6.6 x 10(6) to 4.6 x 10(7) M-1 s-1 are smaller than the diffusional limit; this shows that only approximately 0.1-1% of the diffusional encounters are productive. The first-order rate constant, kcat, for rate-limiting hydrolysis of the phosphoenzyme intermediate at pH = 6 with saturating substrate concentration is independent of viscosity in aqueous sucrose solutions. This shows that sucrose does not destabilize the transition state for phosphoenzyme hydrolysis. However, at pH 8.0 product dissociation is rate limiting and kcat decreases with increasing viscosity in the presence of sucrose, with slopes of delta(k0/kobsd)/delta(eta/eta 0) = 1.2 in 0.04 M Mops buffer, 1.0 in 0.1 M Tris, and 1.2 in 0.67 M Tris buffer. This is consistent with rate-limiting diffusional separation of inorganic phosphate and of Tris phosphate from the enzyme. In contrast, glycerol causes a large decrease in kcat/Km at pH 8.0 and also decreases kcat at pH 6. This shows that glycerol decreases the rate by a solvent effect on the catalytic activity of the enzyme, as well as by increasing the viscosity.

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Year:  1994        PMID: 8068674     DOI: 10.1021/bi00200a018

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  20 in total

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Journal:  Biochemistry       Date:  2010-01-26       Impact factor: 3.162

4.  Selective neutrality and enzyme kinetics.

Authors:  L Demetrius
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5.  Solvent kinetic isotope effects of human placental alkaline phosphatase in reverse micelles.

Authors:  T M Huang; H C Hung; T C Chang; G G Chang
Journal:  Biochem J       Date:  1998-02-15       Impact factor: 3.857

6.  Probing enzymatic activity inside single cells.

Authors:  Jessica Olofsson; Shijun Xu; Gavin D M Jeffries; Aldo Jesorka; Helen Bridle; Ida Isaksson; Stephen G Weber; Owe Orwar
Journal:  Anal Chem       Date:  2013-10-23       Impact factor: 6.986

7.  Comparative enzymology in the alkaline phosphatase superfamily to determine the catalytic role of an active-site metal ion.

Authors:  Jesse G Zalatan; Timothy D Fenn; Daniel Herschlag
Journal:  J Mol Biol       Date:  2008-10-02       Impact factor: 5.469

Review 8.  Why nature really chose phosphate.

Authors:  Shina C L Kamerlin; Pankaz K Sharma; Ram B Prasad; Arieh Warshel
Journal:  Q Rev Biophys       Date:  2013-01-15       Impact factor: 5.318

9.  Arginine coordination in enzymatic phosphoryl transfer: evaluation of the effect of Arg166 mutations in Escherichia coli alkaline phosphatase.

Authors:  Patrick J O'Brien; Jonathan Kyle Lassila; Timothy D Fenn; Jesse G Zalatan; Daniel Herschlag
Journal:  Biochemistry       Date:  2008-07-22       Impact factor: 3.162

10.  Substrate and Transition State Binding in Alkaline Phosphatase Analyzed by Computation of Oxygen Isotope Effects.

Authors:  Daniel Roston; Qiang Cui
Journal:  J Am Chem Soc       Date:  2016-08-31       Impact factor: 15.419

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