Literature DB >> 18974732

A database of mass spectrometric assays for the yeast proteome.

Paola Picotti, Henry Lam, David Campbell, Eric W Deutsch, Hamid Mirzaei, Jeff Ranish, Bruno Domon, Ruedi Aebersold.   

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Year:  2008        PMID： 18974732      PMCID： PMC2770732          DOI： 10.1038/nmeth1108-913

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  10 in total

1.  Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS.

Authors:  Scott A Gerber; John Rush; Olaf Stemman; Marc W Kirschner; Steven P Gygi
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-27       Impact factor: 11.205

Review 2.  Mass spectrometry-based proteomics.

Authors:  Ruedi Aebersold; Matthias Mann
Journal:  Nature       Date:  2003-03-13       Impact factor: 49.962

Review 3.  Scoring proteomes with proteotypic peptide probes.

Authors:  Bernhard Kuster; Markus Schirle; Parag Mallick; Ruedi Aebersold
Journal:  Nat Rev Mol Cell Biol       Date:  2005-07       Impact factor: 94.444

Review 4.  Mass spectrometry and protein analysis.

Authors:  Bruno Domon; Ruedi Aebersold
Journal:  Science       Date:  2006-04-14       Impact factor: 47.728

5.  The implications of proteolytic background for shotgun proteomics.

Authors:  Paola Picotti; Ruedi Aebersold; Bruno Domon
Journal:  Mol Cell Proteomics       Date:  2007-05-28       Impact factor: 5.911

6.  Human Plasma PeptideAtlas.

Authors:  Eric W Deutsch; Jimmy K Eng; Hui Zhang; Nichole L King; Alexey I Nesvizhskii; Biaoyang Lin; Hookeun Lee; Eugene C Yi; Reto Ossola; Ruedi Aebersold
Journal:  Proteomics       Date:  2005-08       Impact factor: 3.984

7.  Global analysis of protein expression in yeast.

Authors:  Sina Ghaemmaghami; Won-Ki Huh; Kiowa Bower; Russell W Howson; Archana Belle; Noah Dephoure; Erin K O'Shea; Jonathan S Weissman
Journal:  Nature       Date:  2003-10-16       Impact factor: 49.962

8.  High sensitivity detection of plasma proteins by multiple reaction monitoring of N-glycosites.

Authors:  Jianru Stahl-Zeng; Vinzenz Lange; Reto Ossola; Katrin Eckhardt; Wilhelm Krek; Ruedi Aebersold; Bruno Domon
Journal:  Mol Cell Proteomics       Date:  2007-07-20       Impact factor: 5.911

9.  Quantification of C-reactive protein in the serum of patients with rheumatoid arthritis using multiple reaction monitoring mass spectrometry and 13C-labeled peptide standards.

Authors:  Eric Kuhn; Jiang Wu; Johann Karl; Hua Liao; Werner Zolg; Brad Guild
Journal:  Proteomics       Date:  2004-04       Impact factor: 3.984

10.  Status of complete proteome analysis by mass spectrometry: SILAC labeled yeast as a model system.

Authors:  Lyris M F de Godoy; Jesper V Olsen; Gustavo A de Souza; Guoqing Li; Peter Mortensen; Matthias Mann
Journal:  Genome Biol       Date:  2006       Impact factor: 13.583
  10 in total
  81 in total

1.  Absolute quantification of the glycolytic pathway in yeast: deployment of a complete QconCAT approach.

Authors:  Kathleen M Carroll; Deborah M Simpson; Claire E Eyers; Christopher G Knight; Philip Brownridge; Warwick B Dunn; Catherine L Winder; Karin Lanthaler; Pinar Pir; Naglis Malys; Douglas B Kell; Stephen G Oliver; Simon J Gaskell; Robert J Beynon
Journal:  Mol Cell Proteomics       Date:  2011-09-19       Impact factor: 5.911

2.  Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis.

Authors:  Ludovic C Gillet; Pedro Navarro; Stephen Tate; Hannes Röst; Nathalie Selevsek; Lukas Reiter; Ron Bonner; Ruedi Aebersold
Journal:  Mol Cell Proteomics       Date:  2012-01-18       Impact factor: 5.911

3.  A computational tool to detect and avoid redundancy in selected reaction monitoring.

Authors:  Hannes Röst; Lars Malmström; Ruedi Aebersold
Journal:  Mol Cell Proteomics       Date:  2012-04-24       Impact factor: 5.911

Review 4.  Selected reaction monitoring-based proteomics: workflows, potential, pitfalls and future directions.

Authors:  Paola Picotti; Ruedi Aebersold
Journal:  Nat Methods       Date:  2012-05-30       Impact factor: 28.547

5.  Mass spectrometry in high-throughput proteomics: ready for the big time.

Authors:  Tommy Nilsson; Matthias Mann; Ruedi Aebersold; John R Yates; Amos Bairoch; John J M Bergeron
Journal:  Nat Methods       Date:  2010-09       Impact factor: 28.547

6.  Synthetic peptide arrays for pathway-level protein monitoring by liquid chromatography-tandem mass spectrometry.

Authors:  Johannes A Hewel; Jian Liu; Kento Onishi; Vincent Fong; Shamanta Chandran; Jonathan B Olsen; Oxana Pogoutse; Mike Schutkowski; Holger Wenschuh; Dirk F H Winkler; Larry Eckler; Peter W Zandstra; Andrew Emili
Journal:  Mol Cell Proteomics       Date:  2010-05-13       Impact factor: 5.911

7.  Options and considerations when selecting a quantitative proteomics strategy.

Authors:  Bruno Domon; Ruedi Aebersold
Journal:  Nat Biotechnol       Date:  2010-07-09       Impact factor: 54.908

8.  The pros and cons of peptide-centric proteomics.

Authors:  Mark W Duncan; Ruedi Aebersold; Richard M Caprioli
Journal:  Nat Biotechnol       Date:  2010-07       Impact factor: 54.908

Review 9.  Generating and navigating proteome maps using mass spectrometry.

Authors:  Christian H Ahrens; Erich Brunner; Ermir Qeli; Konrad Basler; Ruedi Aebersold
Journal:  Nat Rev Mol Cell Biol       Date:  2010-10-14       Impact factor: 94.444

Review 10.  Replacing immunoassays with tryptic digestion-peptide immunoaffinity enrichment and LC-MS/MS.

Authors:  Jessica O Becker; Andrew N Hoofnagle
Journal:  Bioanalysis       Date:  2012-02       Impact factor: 2.681
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