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Literature DB >> 20622832

The pros and cons of peptide-centric proteomics.

Mark W Duncan¹, Ruedi Aebersold, Richard M Caprioli.

Abstract

Mesh：

Substances：
Peptides

Year: 2010 PMID： 20622832 DOI： 10.1038/nbt0710-659

Source DB: PubMed Journal: Nat Biotechnol ISSN： 1087-0156 Impact factor: 54.908

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24 in total

1. Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search.

Authors: Andrew Keller; Alexey I Nesvizhskii; Eugene Kolker; Ruedi Aebersold
Journal: Anal Chem Date: 2002-10-15 Impact factor: 6.986

2. The need for guidelines in publication of peptide and protein identification data: Working Group on Publication Guidelines for Peptide and Protein Identification Data.

Authors: Steven Carr; Ruedi Aebersold; Michael Baldwin; Al Burlingame; Karl Clauser; Alexey Nesvizhskii
Journal: Mol Cell Proteomics Date: 2004-04-09 Impact factor: 5.911

3. Valid data from large-scale proteomics studies.

Authors: Daniel Chamrad; Helmut E Meyer
Journal: Nat Methods Date: 2005-09 Impact factor: 28.547

4. Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations.

Authors: Joshua E Elias; Wilhelm Haas; Brendan K Faherty; Steven P Gygi
Journal: Nat Methods Date: 2005-09 Impact factor: 28.547

Review 5. Organellar proteomics: turning inventories into insights.

Authors: Jens S Andersen; Matthias Mann
Journal: EMBO Rep Date: 2006-09 Impact factor: 8.807

6. Quantitative profiling of proteins in complex mixtures using liquid chromatography and mass spectrometry.

Authors: Dirk Chelius; Pavel V Bondarenko
Journal: J Proteome Res Date: 2002 Jul-Aug Impact factor: 4.466

7. Proteome-wide identification of proteins and their modifications with decreased ambiguities and improved false discovery rates using unique sequence tags.

Authors: Yufeng Shen; Nikola Tolić; Kim K Hixson; Samuel O Purvine; Ljiljana Pasa-Tolić; Wei-Jun Qian; Joshua N Adkins; Ronald J Moore; Richard D Smith
Journal: Anal Chem Date: 2008-02-14 Impact factor: 6.986

Review 8. Quantitation in mass-spectrometry-based proteomics.

Authors: Waltraud X Schulze; Björn Usadel
Journal: Annu Rev Plant Biol Date: 2010 Impact factor: 26.379

Review 9. Post-translational modification of proteins.

Authors: R G Krishna; F Wold
Journal: Adv Enzymol Relat Areas Mol Biol Date: 1993

10. The APEX Quantitative Proteomics Tool: generating protein quantitation estimates from LC-MS/MS proteomics results.

Authors: John C Braisted; Srilatha Kuntumalla; Christine Vogel; Edward M Marcotte; Alan R Rodrigues; Rong Wang; Shih-Ting Huang; Erik S Ferlanti; Alexander I Saeed; Robert D Fleischmann; Scott N Peterson; Rembert Pieper
Journal: BMC Bioinformatics Date: 2008-12-09 Impact factor: 3.169

46 in total

1. msCompare: a framework for quantitative analysis of label-free LC-MS data for comparative candidate biomarker studies.

Authors: Berend Hoekman; Rainer Breitling; Frank Suits; Rainer Bischoff; Peter Horvatovich
Journal: Mol Cell Proteomics Date: 2012-02-07 Impact factor: 5.911

2. Options and considerations when selecting a quantitative proteomics strategy.

Authors: Bruno Domon; Ruedi Aebersold
Journal: Nat Biotechnol Date: 2010-07-09 Impact factor: 54.908

Review 3. Peptide identification by tandem mass spectrometry with alternate fragmentation modes.

Authors: Adrian Guthals; Nuno Bandeira
Journal: Mol Cell Proteomics Date: 2012-05-17 Impact factor: 5.911

4. High-throughput database search and large-scale negative polarity liquid chromatography-tandem mass spectrometry with ultraviolet photodissociation for complex proteomic samples.

Authors: James A Madsen; Hua Xu; Michelle R Robinson; Andrew P Horton; Jared B Shaw; David K Giles; Tamer S Kaoud; Kevin N Dalby; M Stephen Trent; Jennifer S Brodbelt
Journal: Mol Cell Proteomics Date: 2013-05-21 Impact factor: 5.911

Review 5. Liquid chromatography-mass spectrometry-based quantitative proteomics.

Authors: Fang Xie; Tao Liu; Wei-Jun Qian; Vladislav A Petyuk; Richard D Smith
Journal: J Biol Chem Date: 2011-06-01 Impact factor: 5.157

6. Enhanced information output from shotgun proteomics data by protein quantification and peptide quality control (PQPQ).

Authors: Jenny Forshed; Henrik J Johansson; Maria Pernemalm; Rui M M Branca; Annsofi Sandberg; Janne Lehtiö
Journal: Mol Cell Proteomics Date: 2011-07-06 Impact factor: 5.911