Literature DB >> 18953333

Structural basis for exon recognition by a group II intron.

Navtej Toor1, Kanagalaghatta Rajashankar, Kevin S Keating, Anna Marie Pyle.   

Abstract

Free group II introns are infectious retroelements that can bind and insert themselves into RNA and DNA molecules via reverse splicing. Here we report the 3.4-A crystal structure of a complex between an oligonucleotide target substrate and a group IIC intron, as well as the refined free intron structure. The structure of the complex reveals the conformation of motifs involved in exon recognition by group II introns.

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Year:  2008        PMID: 18953333      PMCID: PMC2735234          DOI: 10.1038/nsmb.1509

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  8 in total

1.  Coevolution of group II intron RNA structures with their intron-encoded reverse transcriptases.

Authors:  N Toor; G Hausner; S Zimmerly
Journal:  RNA       Date:  2001-08       Impact factor: 4.942

2.  A three-dimensional perspective on exon binding by a group II self-splicing intron.

Authors:  M Costa; F Michel; E Westhof
Journal:  EMBO J       Date:  2000-09-15       Impact factor: 11.598

3.  A second divalent metal ion in the group II intron reaction center.

Authors:  Peter M Gordon; Robert Fong; Joseph A Piccirilli
Journal:  Chem Biol       Date:  2007-06

4.  Introns and the origin of nucleus-cytosol compartmentalization.

Authors:  William Martin; Eugene V Koonin
Journal:  Nature       Date:  2006-03-02       Impact factor: 49.962

5.  Insertion of group II intron retroelements after intrinsic transcriptional terminators.

Authors:  Aaron R Robart; Wooseok Seo; Steven Zimmerly
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-09       Impact factor: 11.205

6.  Crystal structure of a self-spliced group II intron.

Authors:  Navtej Toor; Kevin S Keating; Sean D Taylor; Anna Marie Pyle
Journal:  Science       Date:  2008-04-04       Impact factor: 47.728

7.  The two steps of group II intron self-splicing are mechanistically distinguishable.

Authors:  M Podar; P S Perlman; R A Padgett
Journal:  RNA       Date:  1998-08       Impact factor: 4.942

8.  Retroids in archaea: phylogeny and lateral origins.

Authors:  Joshua S Rest; David P Mindell
Journal:  Mol Biol Evol       Date:  2003-05-30       Impact factor: 16.240

  8 in total
  41 in total

Review 1.  The tertiary structure of group II introns: implications for biological function and evolution.

Authors:  Anna Marie Pyle
Journal:  Crit Rev Biochem Mol Biol       Date:  2010-06       Impact factor: 8.250

Review 2.  Group II introns: mobile ribozymes that invade DNA.

Authors:  Alan M Lambowitz; Steven Zimmerly
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-08-01       Impact factor: 10.005

3.  DEAD-box protein facilitated RNA folding in vivo.

Authors:  Andreas Liebeg; Oliver Mayer; Christina Waldsich
Journal:  RNA Biol       Date:  2010-11-01       Impact factor: 4.652

4.  Invariant U2 snRNA nucleotides form a stem loop to recognize the intron early in splicing.

Authors:  Rhonda Perriman; Manuel Ares
Journal:  Mol Cell       Date:  2010-05-14       Impact factor: 17.970

5.  The spliceosome as ribozyme hypothesis takes a second step.

Authors:  Samuel E Butcher
Journal:  Proc Natl Acad Sci U S A       Date:  2009-07-21       Impact factor: 11.205

6.  A structural analysis of the group II intron active site and implications for the spliceosome.

Authors:  Kevin S Keating; Navtej Toor; Philip S Perlman; Anna Marie Pyle
Journal:  RNA       Date:  2009-11-30       Impact factor: 4.942

7.  Tertiary architecture of the Oceanobacillus iheyensis group II intron.

Authors:  Navtej Toor; Kevin S Keating; Olga Fedorova; Kanagalaghatta Rajashankar; Jimin Wang; Anna Marie Pyle
Journal:  RNA       Date:  2009-12-01       Impact factor: 4.942

8.  Enhanced group II intron retrohoming in magnesium-deficient Escherichia coli via selection of mutations in the ribozyme core.

Authors:  David M Truong; David J Sidote; Rick Russell; Alan M Lambowitz
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-16       Impact factor: 11.205

Review 9.  Structural Insights into the Mechanism of Group II Intron Splicing.

Authors:  Chen Zhao; Anna Marie Pyle
Journal:  Trends Biochem Sci       Date:  2017-04-21       Impact factor: 13.807

Review 10.  Structural insights into RNA splicing.

Authors:  Navtej Toor; Kevin S Keating; Anna Marie Pyle
Journal:  Curr Opin Struct Biol       Date:  2009-05-13       Impact factor: 6.809

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