Literature DB >> 19443210

Structural insights into RNA splicing.

Navtej Toor1, Kevin S Keating, Anna Marie Pyle.   

Abstract

Intron splicing is a fundamental biological process whereby noncoding sequences are removed from precursor RNAs. Recent work has provided new insights into the structural features and reaction mechanisms of two introns that catalyze their own splicing from precursor RNA: the group I and II introns. In addition, there is an increasing amount of structural information on the spliceosome, which is a ribonucleoprotein machine that catalyzes nuclear pre-mRNA splicing in eukaryotes. Here, we compare structures and catalytic mechanisms of self-splicing RNAs and we discuss the possible implications for spliceosomal reaction mechanisms.

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Year:  2009        PMID: 19443210      PMCID: PMC2756803          DOI: 10.1016/j.sbi.2009.04.002

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  51 in total

1.  Structure of the Tetrahymena ribozyme: base triple sandwich and metal ion at the active site.

Authors:  Feng Guo; Anne R Gooding; Thomas R Cech
Journal:  Mol Cell       Date:  2004-11-05       Impact factor: 17.970

2.  A glimpse into the active site of a group II intron and maybe the spliceosome, too.

Authors:  Kwaku T Dayie; Richard A Padgett
Journal:  RNA       Date:  2008-07-24       Impact factor: 4.942

3.  A relaxed active site after exon ligation by the group I intron.

Authors:  Sarah V Lipchock; Scott A Strobel
Journal:  Proc Natl Acad Sci U S A       Date:  2008-04-11       Impact factor: 11.205

4.  RNase P without RNA: identification and functional reconstitution of the human mitochondrial tRNA processing enzyme.

Authors:  Johann Holzmann; Peter Frank; Esther Löffler; Keiryn L Bennett; Christopher Gerner; Walter Rossmanith
Journal:  Cell       Date:  2008-10-31       Impact factor: 41.582

5.  Structure and function of an RNase H domain at the heart of the spliceosome.

Authors:  Vladimir Pena; Alexey Rozov; Patrizia Fabrizio; Reinhard Lührmann; Markus C Wahl
Journal:  EMBO J       Date:  2008-10-09       Impact factor: 11.598

6.  Crystal structure of the beta-finger domain of Prp8 reveals analogy to ribosomal proteins.

Authors:  Kui Yang; Lingdi Zhang; Tao Xu; Annie Heroux; Rui Zhao
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-08       Impact factor: 11.205

7.  Crystal structure of a self-spliced group II intron.

Authors:  Navtej Toor; Kevin S Keating; Sean D Taylor; Anna Marie Pyle
Journal:  Science       Date:  2008-04-04       Impact factor: 47.728

8.  A three-dimensional model of a group II intron RNA and its interaction with the intron-encoded reverse transcriptase.

Authors:  Lixin Dai; Dinggeng Chai; Shan-Qing Gu; Jesse Gabel; Sergei Y Noskov; Forrest J H Blocker; Alan M Lambowitz; Steven Zimmerly
Journal:  Mol Cell       Date:  2008-05-23       Impact factor: 17.970

9.  Photocrosslinking of 4-thio uracil-containing RNAs supports a side-by-side arrangement of domains 5 and 6 of a group II intron.

Authors:  M Podar; P S Perlman
Journal:  RNA       Date:  1999-02       Impact factor: 4.942

10.  The GANC tetraloop: a novel motif in the group IIC intron structure.

Authors:  Kevin S Keating; Navtej Toor; Anna Marie Pyle
Journal:  J Mol Biol       Date:  2008-08-26       Impact factor: 5.469

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  26 in total

Review 1.  Function of chloroplast RNA-binding proteins.

Authors:  Jessica Jacobs; Ulrich Kück
Journal:  Cell Mol Life Sci       Date:  2010-09-17       Impact factor: 9.261

Review 2.  The tertiary structure of group II introns: implications for biological function and evolution.

Authors:  Anna Marie Pyle
Journal:  Crit Rev Biochem Mol Biol       Date:  2010-06       Impact factor: 8.250

3.  Thermodynamics and kinetics of RNA tertiary structure formation in the junctionless hairpin ribozyme.

Authors:  Neil A White; Charles G Hoogstraten
Journal:  Biophys Chem       Date:  2017-07-08       Impact factor: 2.352

4.  Invariant U2 snRNA nucleotides form a stem loop to recognize the intron early in splicing.

Authors:  Rhonda Perriman; Manuel Ares
Journal:  Mol Cell       Date:  2010-05-14       Impact factor: 17.970

5.  A structural analysis of the group II intron active site and implications for the spliceosome.

Authors:  Kevin S Keating; Navtej Toor; Philip S Perlman; Anna Marie Pyle
Journal:  RNA       Date:  2009-11-30       Impact factor: 4.942

6.  Tertiary architecture of the Oceanobacillus iheyensis group II intron.

Authors:  Navtej Toor; Kevin S Keating; Olga Fedorova; Kanagalaghatta Rajashankar; Jimin Wang; Anna Marie Pyle
Journal:  RNA       Date:  2009-12-01       Impact factor: 4.942

Review 7.  A day in the life of the spliceosome.

Authors:  A Gregory Matera; Zefeng Wang
Journal:  Nat Rev Mol Cell Biol       Date:  2014-02       Impact factor: 94.444

Review 8.  Potential in vivo roles of nucleic acid triple-helices.

Authors:  Fabian A Buske; John S Mattick; Timothy L Bailey
Journal:  RNA Biol       Date:  2011-05-01       Impact factor: 4.652

Review 9.  The function of spliceosome components in open mitosis.

Authors:  Jennifer C Hofmann; Alma Husedzinovic; Oliver J Gruss
Journal:  Nucleus       Date:  2010-08-13       Impact factor: 4.197

10.  Prp8, the pivotal protein of the spliceosomal catalytic center, evolved from a retroelement-encoded reverse transcriptase.

Authors:  Mensur Dlakić; Arcady Mushegian
Journal:  RNA       Date:  2011-03-25       Impact factor: 4.942

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