Literature DB >> 18948737

Beyond heterochromatin: SIR2 inhibits the initiation of DNA replication.

Catherine A Fox1, Michael Weinreich.   

Abstract

Over the last decade, data have accumulated that support a role for chromatin structure in regulating the initiation of DNA replication and its timing during S-phase. However, the mechanisms underlying how chromatin structure influences replication initiation are not always understood. For example, in Drosophila histone acetylation at the ACE3 and Ori-beta sequences near one of the amplified chorion loci is correlated with ORC (origin recognition complex) binding and re-replication of this locus. Whether histone acetylation promotes ORC binding or some later step in replication is not known. In yeast, hypo-acetylated heterochromatin and telomeric regions replicate late in S-phase but the mechanisms that restrict the initiation of replication at these loci are not fully understood. Nonetheless, it seems likely that histone acetylation and other types of histone modification will significantly impact DNA replication. A recent study published in Molecular Cell reveals a role for the conserved NAD(+)-dependent histone deacetylase, Sir2, in inhibiting the assembly of the multiprotein complex necessary for the selection and activation of yeast replication origins. Here, we highlight key conclusions from this study, place them in perspective with earlier work, and outline important future questions.

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Year:  2008        PMID: 18948737      PMCID: PMC4529125          DOI: 10.4161/cc.7.21.6971

Source DB:  PubMed          Journal:  Cell Cycle        ISSN: 1551-4005            Impact factor:   4.534


  64 in total

1.  Chromatin regulates origin activity in Drosophila follicle cells.

Authors:  Bhagwan D Aggarwal; Brian R Calvi
Journal:  Nature       Date:  2004-07-15       Impact factor: 49.962

2.  Isolation of the Cdc45/Mcm2-7/GINS (CMG) complex, a candidate for the eukaryotic DNA replication fork helicase.

Authors:  Stephen E Moyer; Peter W Lewis; Michael R Botchan
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-23       Impact factor: 11.205

3.  Genome-scale identification of nucleosome positions in S. cerevisiae.

Authors:  Guo-Cheng Yuan; Yuen-Jong Liu; Michael F Dion; Michael D Slack; Lani F Wu; Steven J Altschuler; Oliver J Rando
Journal:  Science       Date:  2005-06-16       Impact factor: 47.728

Review 4.  The regulation of INK4/ARF in cancer and aging.

Authors:  William Y Kim; Norman E Sharpless
Journal:  Cell       Date:  2006-10-20       Impact factor: 41.582

Review 5.  The structure and function of yeast ARS elements.

Authors:  C S Newlon; J F Theis
Journal:  Curr Opin Genet Dev       Date:  1993-10       Impact factor: 5.578

6.  Completion of replication map of Saccharomyces cerevisiae chromosome III.

Authors:  A Poloumienko; A Dershowitz; J De; C S Newlon
Journal:  Mol Biol Cell       Date:  2001-11       Impact factor: 4.138

7.  Oncogenic activity of Cdc6 through repression of the INK4/ARF locus.

Authors:  Susana Gonzalez; Peter Klatt; Sonia Delgado; Esther Conde; Fernando Lopez-Rios; Montserrat Sanchez-Cespedes; Juan Mendez; Francisco Antequera; Manuel Serrano
Journal:  Nature       Date:  2006-03-30       Impact factor: 49.962

8.  Stepwise assembly of initiation proteins at budding yeast replication origins in vitro.

Authors:  T Seki; J F Diffley
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-19       Impact factor: 11.205

Review 9.  The Sir2 family of protein deacetylases.

Authors:  Gil Blander; Leonard Guarente
Journal:  Annu Rev Biochem       Date:  2004       Impact factor: 23.643

Review 10.  Sirtuins in mammals: insights into their biological function.

Authors:  Shaday Michan; David Sinclair
Journal:  Biochem J       Date:  2007-05-15       Impact factor: 3.857

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  9 in total

Review 1.  Regulation of DNA replication by chromatin structures: accessibility and recruitment.

Authors:  Makoto T Hayashi; Hisao Masukata
Journal:  Chromosoma       Date:  2010-08-03       Impact factor: 4.316

Review 2.  Epigenetics in Saccharomyces cerevisiae.

Authors:  Michael Grunstein; Susan M Gasser
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-07-01       Impact factor: 10.005

3.  Quantification of nanoscale density fluctuations by electron microscopy: probing cellular alterations in early carcinogenesis.

Authors:  Prabhakar Pradhan; Dhwanil Damania; Hrushikesh M Joshi; Vladimir Turzhitsky; Hariharan Subramanian; Hemant K Roy; Allen Taflove; Vinayak P Dravid; Vadim Backman
Journal:  Phys Biol       Date:  2011-03-25       Impact factor: 2.583

Review 4.  The chromatin backdrop of DNA replication: lessons from genetics and genome-scale analyses.

Authors:  Amy L Conner; Mirit I Aladjem
Journal:  Biochim Biophys Acta       Date:  2012-02-08

Review 5.  Preventing excess replication origin activation to ensure genome stability.

Authors:  Bhushan L Thakur; Anagh Ray; Christophe E Redon; Mirit I Aladjem
Journal:  Trends Genet       Date:  2021-10-06       Impact factor: 11.639

6.  The epigenetic control of E-box and Myc-dependent chromatin modifications regulate the licensing of lamin B2 origin during cell cycle.

Authors:  Manickavinayaham Swarnalatha; Anup Kumar Singh; Vijay Kumar
Journal:  Nucleic Acids Res       Date:  2012-07-05       Impact factor: 16.971

7.  Analysis of model replication origins in Drosophila reveals new aspects of the chromatin landscape and its relationship to origin activity and the prereplicative complex.

Authors:  Jun Liu; Kristopher McConnell; Michael Dixon; Brian R Calvi
Journal:  Mol Biol Cell       Date:  2011-11-02       Impact factor: 4.138

8.  Phosphorylated SIRT1 associates with replication origins to prevent excess replication initiation and preserve genomic stability.

Authors:  Koichi Utani; Haiqing Fu; Sang-Min Jang; Anna B Marks; Owen K Smith; Ya Zhang; Christophe E Redon; Noriaki Shimizu; Mirit I Aladjem
Journal:  Nucleic Acids Res       Date:  2017-07-27       Impact factor: 16.971

9.  Human SIRT1 regulates DNA binding and stability of the Mcm10 DNA replication factor via deacetylation.

Authors:  Samuel T Fatoba; Silvia Tognetti; Melissa Berto; Elisabetta Leo; Claire M Mulvey; Jasminka Godovac-Zimmermann; Yves Pommier; Andrei L Okorokov
Journal:  Nucleic Acids Res       Date:  2013-02-28       Impact factor: 16.971

  9 in total

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