Literature DB >> 18855007

Establishment of a soybean (Glycine max Merr. L) transposon-based mutagenesis repository.

Melanie Mathieu1, Elizabeth K Winters, Fanming Kong, Jinrong Wan, Shaoxing Wang, Helene Eckert, Diane Luth, Margie Paz, Christopher Donovan, Zhanyuan Zhang, David Somers, Kan Wang, Henry Nguyen, Randy C Shoemaker, Gary Stacey, Tom Clemente.   

Abstract

Soybean is a major crop species providing valuable feedstock for food, feed and biofuel. In recent years, considerable progress has been made in developing genomic resources for soybean, including on-going efforts to sequence the genome. These efforts have identified a large number of soybean genes, most with unknown function. Therefore, a major research priority is determining the function of these genes, especially those involved in agronomic performance and seed traits. One means to study gene function is through mutagenesis and the study of the resulting phenotypes. Transposon-tagging has been used successfully in both model and crop plants to support studies of gene function. In this report, we describe efforts to generate a transposon-based mutant collection of soybean. The Ds transposon system was used to create activation-tagging, gene and enhancer trap elements. Currently, the repository houses approximately 900 soybean events, with flanking sequence data derived from 200 of these events. Analysis of the insertions revealed approximately 70% disrupted known genes, with the majority matching sequences derived from either Glycine max or Medicago truncatula sequences. Among the mutants generated, one resulted in male-sterility and was shown to disrupt the strictosidine synthase gene. This example clearly demonstrates that it is possible to disrupt soybean gene function by insertional mutagenesis and to derive useful mutants by this approach in spite of the tetraploid nature of the soybean genome.

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Year:  2008        PMID: 18855007     DOI: 10.1007/s00425-008-0827-9

Source DB:  PubMed          Journal:  Planta        ISSN: 0032-0935            Impact factor:   4.116


  53 in total

1.  Transgene structures in T-DNA-inserted rice plants.

Authors:  Sung-Ryul Kim; Jinwon Lee; Sung-Hoon Jun; Sunhee Park; Hong-Gyu Kang; Soontae Kwon; Gynheung An
Journal:  Plant Mol Biol       Date:  2003-07       Impact factor: 4.076

2.  RNAi-mediated silencing of the myo-inositol-1-phosphate synthase gene (GmMIPS1) in transgenic soybean inhibited seed development and reduced phytate content.

Authors:  Aline C S Nunes; Giovanni R Vianna; Florencia Cuneo; Jaime Amaya-Farfán; Guy de Capdeville; Elíbio L Rech; Francisco J L Aragão
Journal:  Planta       Date:  2006-01-04       Impact factor: 4.116

3.  Embryo-specific silencing of a transporter reduces phytic acid content of maize and soybean seeds.

Authors:  Jinrui Shi; Hongyu Wang; Kathleen Schellin; Bailin Li; Marianna Faller; Johan M Stoop; Robert B Meeley; David S Ertl; Jerry P Ranch; Kimberly Glassman
Journal:  Nat Biotechnol       Date:  2007-08-05       Impact factor: 54.908

4.  A soybean transcript map: gene distribution, haplotype and single-nucleotide polymorphism analysis.

Authors:  Ik-Young Choi; David L Hyten; Lakshmi K Matukumalli; Qijian Song; Julian M Chaky; Charles V Quigley; Kevin Chase; K Gordon Lark; Robert S Reiter; Mun-Sup Yoon; Eun-Young Hwang; Seung-In Yi; Nevin D Young; Randy C Shoemaker; Curtis P van Tassell; James E Specht; Perry B Cregan
Journal:  Genetics       Date:  2007-03-04       Impact factor: 4.562

Review 5.  Using genomics to study legume seed development.

Authors:  Brandon H Le; Javier A Wagmaister; Tomokazu Kawashima; Anhthu Q Bui; John J Harada; Robert B Goldberg
Journal:  Plant Physiol       Date:  2007-06       Impact factor: 8.340

6.  Efficient soybean transformation using hygromycin B selection in the cotyledonary-node method.

Authors:  Paula M Olhoft; Lex E Flagel; Christopher M Donovan; David A Somers
Journal:  Planta       Date:  2002-11-01       Impact factor: 4.116

7.  Transcriptional gene silencing as a tool for uncovering gene function in maize.

Authors:  A Mark Cigan; Erica Unger-Wallace; Kristin Haug-Collet
Journal:  Plant J       Date:  2005-09       Impact factor: 6.417

8.  The small, versatile pPZP family of Agrobacterium binary vectors for plant transformation.

Authors:  P Hajdukiewicz; Z Svab; P Maliga
Journal:  Plant Mol Biol       Date:  1994-09       Impact factor: 4.076

9.  Establishing an efficient Ac/Ds tagging system in rice: large-scale analysis of Ds flanking sequences.

Authors:  Tatiana Kolesnik; Ildiko Szeverenyi; Doris Bachmann; Chellian Santhosh Kumar; Shuye Jiang; Rengasamy Ramamoorthy; Minnie Cai; Zhi Gang Ma; Venkatesan Sundaresan; Srinivasan Ramachandran
Journal:  Plant J       Date:  2004-01       Impact factor: 6.417

10.  Genome-wide analysis of Agrobacterium T-DNA integration sites in the Arabidopsis genome generated under non-selective conditions.

Authors:  Sang-Ic Kim; Stanton B Gelvin
Journal:  Plant J       Date:  2007-06-30       Impact factor: 6.417

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  25 in total

1.  Co-expression of soybean Dicer-like genes in response to stress and development.

Authors:  Shaun J Curtin; Michael B Kantar; Han W Yoon; Adam M Whaley; Jessica A Schlueter; Robert M Stupar
Journal:  Funct Integr Genomics       Date:  2012-04-15       Impact factor: 3.410

2.  A Medicago truncatula tobacco retrotransposon insertion mutant collection with defects in nodule development and symbiotic nitrogen fixation.

Authors:  Catalina I Pislariu; Jeremy D Murray; JiangQi Wen; Viviane Cosson; RajaSekhara Reddy Duvvuru Muni; Mingyi Wang; Vagner A Benedito; Andry Andriankaja; Xiaofei Cheng; Ivone Torres Jerez; Samuel Mondy; Shulan Zhang; Mark E Taylor; Million Tadege; Pascal Ratet; Kirankumar S Mysore; Rujin Chen; Michael K Udvardi
Journal:  Plant Physiol       Date:  2012-06-07       Impact factor: 8.340

Review 3.  Mutagenesis and beyond! Tools for understanding legume biology.

Authors:  Million Tadege; Trevor L Wang; Jiangqi Wen; Pascal Ratet; Kirankumar S Mysore
Journal:  Plant Physiol       Date:  2009-09-09       Impact factor: 8.340

Review 4.  Functional genomics of soybean for improvement of productivity in adverse conditions.

Authors:  Lam-Son Phan Tran; Keiichi Mochida
Journal:  Funct Integr Genomics       Date:  2010-06-27       Impact factor: 3.410

5.  Targeted mutagenesis of duplicated genes in soybean with zinc-finger nucleases.

Authors:  Shaun J Curtin; Feng Zhang; Jeffry D Sander; William J Haun; Colby Starker; Nicholas J Baltes; Deepak Reyon; Elizabeth J Dahlborg; Mathew J Goodwin; Andrew P Coffman; Drena Dobbs; J Keith Joung; Daniel F Voytas; Robert M Stupar
Journal:  Plant Physiol       Date:  2011-04-04       Impact factor: 8.340

6.  The rice miniature inverted repeat transposable element mPing is an effective insertional mutagen in soybean.

Authors:  C Nathan Hancock; Feng Zhang; Kristen Floyd; Aaron O Richardson; Peter Lafayette; Donna Tucker; Susan R Wessler; Wayne A Parrott
Journal:  Plant Physiol       Date:  2011-08-15       Impact factor: 8.340

7.  Adaptive evolution involving gene duplication and insertion of a novel Ty1/copia-like retrotransposon in soybean.

Authors:  Akira Kanazawa; Baohui Liu; Fanjiang Kong; Sachiko Arase; Jun Abe
Journal:  J Mol Evol       Date:  2009-07-23       Impact factor: 2.395

8.  Transposon based activation tagging in diploid strawberry and monoploid derivatives of potato.

Authors:  Nan Lu; Jared D Carter; Tatiana Boluarte Medina; Sarah H Holt; Norma Constanza Manrique-Carpintero; Kendall T Upham; Andy Pereira; Vladimir Shulaev; Richard E Veilleux
Journal:  Plant Cell Rep       Date:  2014-04-12       Impact factor: 4.570

9.  Tnt1 retrotransposon mutagenesis: a tool for soybean functional genomics.

Authors:  Yaya Cui; Shyam Barampuram; Minviluz G Stacey; C Nathan Hancock; Seth Findley; Melanie Mathieu; Zhanyuan Zhang; Wayne A Parrott; Gary Stacey
Journal:  Plant Physiol       Date:  2012-11-01       Impact factor: 8.340

Review 10.  Phenome analysis in plant species using loss-of-function and gain-of-function mutants.

Authors:  Takashi Kuromori; Shinya Takahashi; Youichi Kondou; Kazuo Shinozaki; Minami Matsui
Journal:  Plant Cell Physiol       Date:  2009-06-05       Impact factor: 4.927

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