Literature DB >> 20582712

Functional genomics of soybean for improvement of productivity in adverse conditions.

Lam-Son Phan Tran1, Keiichi Mochida.   

Abstract

Global soybean production is frequently impacted by various stresses, including both abiotic and biotic stresses. To develop soybean plants with enhanced tolerance to different stressors, functional genomics of soybean and a comprehensive understanding of available biotechnological resources and approaches are essential. In this review, we will discuss recent advances in soybean functional genomics which provide unprecedented opportunities to understand global patterns of gene expression, gene regulatory networks, various physiological, biochemical, and metabolic pathways as well as their association with the development of specific phenotypes. Soybean functional genomics, therefore, will ultimately enable us to develop new soybean varieties with improved productivity under adverse conditions by genetic engineering.

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Year:  2010        PMID: 20582712     DOI: 10.1007/s10142-010-0178-z

Source DB:  PubMed          Journal:  Funct Integr Genomics        ISSN: 1438-793X            Impact factor:   3.410


  116 in total

1.  Comparative analyses of the proteomes of leaves and flowers at various stages of development reveal organ-specific functional differentiation of proteins in soybean.

Authors:  Nagib Ahsan; Setsuko Komatsu
Journal:  Proteomics       Date:  2009-11       Impact factor: 3.984

2.  Isolation of a superfamily of candidate disease-resistance genes in soybean based on a conserved nucleotide-binding site.

Authors:  Y G Yu; G R Buss; M A Maroof
Journal:  Proc Natl Acad Sci U S A       Date:  1996-10-15       Impact factor: 11.205

3.  Two classes of highly similar coiled coil-nucleotide binding-leucine rich repeat genes isolated from the Rps1-k locus encode Phytophthora resistance in soybean.

Authors:  Hongyu Gao; Narayanan N Narayanan; Lori Ellison; Madan K Bhattacharyya
Journal:  Mol Plant Microbe Interact       Date:  2005-10       Impact factor: 4.171

4.  Improving plant drought, salt, and freezing tolerance by gene transfer of a single stress-inducible transcription factor.

Authors:  M Kasuga; Q Liu; S Miura; K Yamaguchi-Shinozaki; K Shinozaki
Journal:  Nat Biotechnol       Date:  1999-03       Impact factor: 54.908

5.  Differential sensitivity to chloride and sodium ions in seedlings of Glycine max and G. soja under NaCl stress.

Authors:  Qingyun Luo; Bingjun Yu; Youliang Liu
Journal:  J Plant Physiol       Date:  2005-09       Impact factor: 3.549

6.  Identification and prediction of abiotic stress responsive transcription factors involved in abiotic stress signaling in soybean.

Authors:  Lam-Son Phan Tran; Keiichi Mochida
Journal:  Plant Signal Behav       Date:  2010-03-06

7.  Co-expression of the stress-inducible zinc finger homeodomain ZFHD1 and NAC transcription factors enhances expression of the ERD1 gene in Arabidopsis.

Authors:  Lam-Son Phan Tran; Kazuo Nakashima; Yoh Sakuma; Yuriko Osakabe; Feng Qin; Sean D Simpson; Kyonoshin Maruyama; Yasunari Fujita; Kazuo Shinozaki; Kazuko Yamaguchi-Shinozaki
Journal:  Plant J       Date:  2007-01       Impact factor: 6.417

8.  Convergent evolution of disease resistance gene specificity in two flowering plant families.

Authors:  Tom Ashfield; Laura E Ong; Kan Nobuta; Christopher M Schneider; Roger W Innes
Journal:  Plant Cell       Date:  2004-01-23       Impact factor: 11.277

9.  Nitrogen fixation control under drought stress. Localized or systemic?

Authors:  Daniel Marino; Pierre Frendo; Ruben Ladrera; Ana Zabalza; Alain Puppo; Cesar Arrese-Igor; Esther M González
Journal:  Plant Physiol       Date:  2007-04       Impact factor: 8.340

10.  Phytome: a platform for plant comparative genomics.

Authors:  Stefanie Hartmann; Dihui Lu; Jason Phillips; Todd J Vision
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

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  32 in total

1.  Brassica RNA binding protein ERD4 is involved in conferring salt, drought tolerance and enhancing plant growth in Arabidopsis.

Authors:  Archana N Rai; Srinath Tamirisa; K V Rao; Vinay Kumar; P Suprasanna
Journal:  Plant Mol Biol       Date:  2015-12-28       Impact factor: 4.076

Review 2.  Progress studies of drought-responsive genes in rice.

Authors:  Toto Hadiarto; Lam-Son Phan Tran
Journal:  Plant Cell Rep       Date:  2010-12-04       Impact factor: 4.570

3.  The Lesion Simulating Disease (LSD) gene family as a variable in soybean response to Phakopsora pachyrhizi infection and dehydration.

Authors:  Caroline Cabreira; Alexandro Cagliari; Lauro Bücker-Neto; Beatriz Wiebke-Strohm; Loreta B de Freitas; Francismar C Marcelino-Guimarães; Alexandre L Nepomuceno; Márcia M A N Margis-Pinheiro; Maria H Bodanese-Zanettini
Journal:  Funct Integr Genomics       Date:  2013-06-12       Impact factor: 3.410

4.  Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.

Authors:  Satish K Guttikonda; Babu Valliyodan; Anjanasree K Neelakandan; Lam-Son Phan Tran; Rajesh Kumar; Truyen N Quach; Priyamvada Voothuluru; Juan J Gutierrez-Gonzalez; Donavan L Aldrich; Stephen G Pallardy; Robert E Sharp; Tuan-Hua David Ho; Henry T Nguyen
Journal:  Mol Biol Rep       Date:  2014-09-06       Impact factor: 2.316

5.  Identification of soybean drought-tolerant genotypes and loci correlated with agronomic traits contributes new candidate genes for breeding.

Authors:  Limiao Chen; Yisheng Fang; Xiangyong Li; Kai Zeng; Haifeng Chen; Hengbin Zhang; Hongli Yang; Dong Cao; Qingnan Hao; Songli Yuan; Chanjuan Zhang; Wei Guo; Shuilian Chen; Zhonglu Yang; Zhihui Shan; Xiaojuan Zhang; Dezhen Qiu; Yong Zhan; Xin-An Zhou
Journal:  Plant Mol Biol       Date:  2019-12-09       Impact factor: 4.076

6.  Evaluation of candidate reference genes for normalization of quantitative RT-PCR in soybean tissues under various abiotic stress conditions.

Authors:  Dung Tien Le; Donavan L Aldrich; Babu Valliyodan; Yasuko Watanabe; Chien Van Ha; Rie Nishiyama; Satish K Guttikonda; Truyen N Quach; Juan J Gutierrez-Gonzalez; Lam-Son Phan Tran; Henry T Nguyen
Journal:  PLoS One       Date:  2012-09-28       Impact factor: 3.240

7.  Soybean genetic transformation: A valuable tool for the functional study of genes and the production of agronomically improved plants.

Authors:  Milena Schenkel Homrich; Beatriz Wiebke-Strohm; Ricardo Luís Mayer Weber; Maria Helena Bodanese-Zanettini
Journal:  Genet Mol Biol       Date:  2012-12-18       Impact factor: 1.771

8.  Expression of a maize SOC1 gene enhances soybean yield potential through modulating plant growth and flowering.

Authors:  Xue Han; Dechun Wang; Guo-Qing Song
Journal:  Sci Rep       Date:  2021-06-17       Impact factor: 4.379

9.  Differential gene expression in soybean leaf tissues at late developmental stages under drought stress revealed by genome-wide transcriptome analysis.

Authors:  Dung Tien Le; Rie Nishiyama; Yasuko Watanabe; Maho Tanaka; Motoaki Seki; Le Huy Ham; Kazuko Yamaguchi-Shinozaki; Kazuo Shinozaki; Lam-Son Phan Tran
Journal:  PLoS One       Date:  2012-11-19       Impact factor: 3.240

10.  Characterization of the newly developed soybean cultivar DT2008 in relation to the model variety W82 reveals a new genetic resource for comparative and functional genomics for improved drought tolerance.

Authors:  Chien Van Ha; Dung Tien Le; Rie Nishiyama; Yasuko Watanabe; Uyen Thi Tran; Nguyen Van Dong; Lam-Son Phan Tran
Journal:  Biomed Res Int       Date:  2012-12-27       Impact factor: 3.411

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