Literature DB >> 18847206

Nature of the Fe-O2 bonding in oxy-myoglobin: effect of the protein.

Hui Chen1, Masao Ikeda-Saito, Sason Shaik.   

Abstract

The nature of the Fe-O2 bonding in oxy-myoglobin was probed by theoretical calculations: (a) QM/MM (hybrid quantum mechanical/molecular mechanical) calculations using DFT/MM and CASSCF/MM methods and (b) gas-phase calculations using DFT (density functional theory) and CASSCF (complete active space self-consistent field) methods. Within the protein, the O2 is hydrogen bonded by His64 and the complex feels the bulk polarity of the protein. Removal of the protein causes major changes in the complex. Thus, while CASSCF/MM and DFT/MM are similar in terms of state constitution, degree of O2 charge, and nature of the lowest triplet state, the gas-phase CASSCF(g) species is very different. Valence bond (VB) analysis of the CASSCF/MM wave function unequivocally supports the Weiss bonding mechanism. This bonding arises by electron transfer from heme-Fe(II) to O2 and the so formed species coupled then to a singlet state Fe(III)-O2(-) that possesses a dative sigma(Fe-O) bond and a weakly coupled pi(Fe-O2) bond pair. The bonding mechanism in the gas phase is similar, but now the sigma(Fe-O) bond involves higher back-donation from O2(-) to Fe(III), while the constituents of pi(Fe-O2) bond pair have greater delocalization tails. The protein thus strengthens the Fe(III)-O2(-) character of the complex and thereby affects its bonding features and the oxygen binding affinity of Mb. The VB model is generalized, showing how the protein or the axial ligand of the oxyheme complex can determine the nature of its bonding in terms of the blend of the three bonding models: Weiss, Pauling, and McClure-Goddard.

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Year:  2008        PMID: 18847206     DOI: 10.1021/ja805434m

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  46 in total

1.  Structural insights into ligand dynamics: correlated oxygen and picket motion in oxycobalt picket fence porphyrins.

Authors:  Jianfeng Li; Bruce C Noll; Allen G Oliver; W Robert Scheidt
Journal:  J Am Chem Soc       Date:  2012-06-12       Impact factor: 15.419

2.  Correlated ligand dynamics in oxyiron picket fence porphyrins: structural and Mössbauer investigations.

Authors:  Jianfeng Li; Bruce C Noll; Allen G Oliver; Charles E Schulz; W Robert Scheidt
Journal:  J Am Chem Soc       Date:  2013-10-01       Impact factor: 15.419

3.  X-ray absorption spectroscopic investigation of the electronic structure differences in solution and crystalline oxyhemoglobin.

Authors:  Samuel A Wilson; Evan Green; Irimpan I Mathews; Maurizio Benfatto; Keith O Hodgson; Britt Hedman; Ritimukta Sarangi
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-23       Impact factor: 11.205

4.  Effective intermediate-spin iron in O2-transporting heme proteins.

Authors:  Nils Schuth; Stefan Mebs; Dennis Huwald; Pierre Wrzolek; Matthias Schwalbe; Anja Hemschemeier; Michael Haumann
Journal:  Proc Natl Acad Sci U S A       Date:  2017-07-24       Impact factor: 11.205

5.  Quantum chemical DFT study of the interaction between molecular oxygen and FeN₄ complexes, and effect of the macrocyclic ligand.

Authors:  Adilson Luís Pereira Silva; Luciano Farias de Almeida; Aldaléa Lopes Brandes Marques; Hawbertt Rocha Costa; Auro Atsushi Tanaka; Albérico Borges Ferreira da Silva; Jaldyr de Jesus Gomes Varela
Journal:  J Mol Model       Date:  2014-02-25       Impact factor: 1.810

6.  Resonant inelastic X-ray scattering determination of the electronic structure of oxyhemoglobin and its model complex.

Authors:  James J Yan; Thomas Kroll; Michael L Baker; Samuel A Wilson; Richard Decréau; Marcus Lundberg; Dimosthenis Sokaras; Pieter Glatzel; Britt Hedman; Keith O Hodgson; Edward I Solomon
Journal:  Proc Natl Acad Sci U S A       Date:  2019-02-04       Impact factor: 11.205

Review 7.  Spectroscopic studies of the cytochrome P450 reaction mechanisms.

Authors:  Piotr J Mak; Ilia G Denisov
Journal:  Biochim Biophys Acta Proteins Proteom       Date:  2017-06-28       Impact factor: 3.036

8.  Iron L-edge X-ray absorption spectroscopy of oxy-picket fence porphyrin: experimental insight into Fe-O2 bonding.

Authors:  Samuel A Wilson; Thomas Kroll; Richard A Decreau; Rosalie K Hocking; Marcus Lundberg; Britt Hedman; Keith O Hodgson; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2013-01-10       Impact factor: 15.419

9.  Intermediate P* from soluble methane monooxygenase contains a diferrous cluster.

Authors:  Rahul Banerjee; Katlyn K Meier; Eckard Münck; John D Lipscomb
Journal:  Biochemistry       Date:  2013-06-13       Impact factor: 3.162

10.  Spin Interconversion of Heme-Peroxo-Copper Complexes Facilitated by Intramolecular Hydrogen-Bonding Interactions.

Authors:  Andrew W Schaefer; Melanie A Ehudin; David A Quist; Joel A Tang; Kenneth D Karlin; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2019-03-14       Impact factor: 15.419

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