Literature DB >> 11983404

High pressure, a tool for exploring heme protein active sites.

Gaston Hui Bon Hoa1, Mark A McLean, Stephen G Sligar.   

Abstract

High pressure is an interesting and suitable parameter in the study of the dynamics and stability of proteins. The effects of pressure on proteins delineates its volumic (deltaV degrees ) and energetic (deltaG degrees ) parameters. An enormous amount of effort has been invested by several laboratories in developing basic theory and high pressure techniques that allow the determination of barotropic parameters. Cytochrome P450s, one of the largest super families of heme proteins, are good models for high pressure studies. Two distinct pressure-induced spin transitions of the heme iron in the active site and a P450 to P420 inactivation process have been characterized. The obtained reaction volumes of these two processes for a series of analog-bound cytochrome P450s are compared. We have shown that both the spin volume and the inactivation volume are dependent on the substrate analogs which are known to modulate the polarity and hydration of the heme pocket. Several linear correlations were found between these reaction volumes and the physico-chemical properties of the heme protein such as the polarity-induced exposure of tyrosines, the hydration of the cytochrome CYP101 heme pocket, and the mobility and binding of the substrates indicate that they constitute the main contribution to the complex thermodynamic reaction volume parameters. This interpretation allows us to conclude that cytochrome CYP101, CYP2B4 and CYP102 possess a similar mechanism of substrate binding. Interestingly the barotropic behaviors of monomeric cytochrome P450s are quite different from those of oligomeric and hetorooligomeric cytochrome P450s. The interactions of heterooligomeric subunits influence the stability of individual cytochrome P450s and the asymmetric organization of subunits which can control and modulate the activity and the recognition with NADPH-cytochrome P450 reductase.

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Year:  2002        PMID: 11983404     DOI: 10.1016/s0167-4838(01)00352-1

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  21 in total

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2.  Monitoring of neuronal loss in the hippocampus of Aβ-injected rat: autophagy, mitophagy, and mitochondrial biogenesis stand against apoptosis.

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3.  Effect of conformational dynamics on substrate recognition and specificity as probed by the introduction of a de novo disulfide bond into cytochrome P450 2B1.

Authors:  Haoming Zhang; Cesar Kenaan; Djemel Hamdane; Gaston Hui Bon Hoa; Paul F Hollenberg
Journal:  J Biol Chem       Date:  2009-07-15       Impact factor: 5.157

Review 4.  Spectroscopic studies of the cytochrome P450 reaction mechanisms.

Authors:  Piotr J Mak; Ilia G Denisov
Journal:  Biochim Biophys Acta Proteins Proteom       Date:  2017-06-28       Impact factor: 3.036

5.  Volume of Hsp90 ligand binding and the unfolding phase diagram as a function of pressure and temperature.

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Journal:  Eur Biophys J       Date:  2013-01-05       Impact factor: 1.733

6.  Resolution of two substrate-binding sites in an engineered cytochrome P450eryF bearing a fluorescent probe.

Authors:  Dmitri R Davydov; Alexandra E Botchkareva; Nadezhda E Davydova; James R Halpert
Journal:  Biophys J       Date:  2005-04-15       Impact factor: 4.033

7.  Effect of Ligands on HP-Induced Unfolding and Oligomerization of β-Lactoglobulin.

Authors:  Simeon Minić; Burkhard Annighöfer; Arnaud Hélary; Djemel Hamdane; Gaston Hui Bon Hoa; Camille Loupiac; Annie Brûlet; Sophie Combet
Journal:  Biophys J       Date:  2020-10-29       Impact factor: 4.033

8.  CYP261 enzymes from deep sea bacteria: a clue to conformational heterogeneity in cytochromes P450.

Authors:  Dmitri R Davydov; Elena V Sineva; Nadezhda Y Davydova; Douglas H Bartlett; James R Halpert
Journal:  Biotechnol Appl Biochem       Date:  2013-01-25       Impact factor: 2.431

9.  Rational engineering of cytochromes P450 2B6 and 2B11 for enhanced stability: Insights into structural importance of residue 334.

Authors:  Jyothi C Talakad; P Ross Wilderman; Dmitri R Davydov; Santosh Kumar; James R Halpert
Journal:  Arch Biochem Biophys       Date:  2009-11-26       Impact factor: 4.013

10.  Characterization of the proximal ligand in the P420 form of inducible nitric oxide synthase.

Authors:  Joseph Sabat; Dennis J Stuehr; Syun-Ru Yeh; Denis L Rousseau
Journal:  J Am Chem Soc       Date:  2009-09-02       Impact factor: 15.419

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