Literature DB >> 19040328

Allosteric P450 mechanisms: multiple binding sites, multiple conformers or both?

Dmitri R Davydov1, James R Halpert.   

Abstract

According to the initial hypothesis on the mechanisms of cooperativity in drug-metabolizing cytochromes P450, a loose fit of a single substrate molecule in the P450 active site results in a requirement for the binding of multiple ligand molecules for efficient catalysis. Although simultaneous occupancy of the active site by multiple ligands is now well established, there is increasing evidence that the mechanistic basis of cooperativity also involves an important ligand-induced conformational transition. Moreover, recent studies demonstrate that the conformational heterogeneity of the enzyme is stabilized by ligand-dependent interactions of several P450 molecules. Application of the concept of an oligomeric allosteric enzyme to microsomal cytochromes P450 in combination with a general paradigm of multiple ligand occupancy of the active site provides an excellent explanation for complex manifestations of the atypical kinetic behavior of the enzyme.

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Year:  2008        PMID: 19040328      PMCID: PMC2651226          DOI: 10.1517/17425250802500028

Source DB:  PubMed          Journal:  Expert Opin Drug Metab Toxicol        ISSN: 1742-5255            Impact factor:   4.481


  128 in total

1.  Fluorescence resonance energy transfer analysis of cytochromes P450 2C2 and 2E1 molecular interactions in living cells.

Authors:  Elzbieta Szczesna-Skorupa; Bahar Mallah; Byron Kemper
Journal:  J Biol Chem       Date:  2003-05-23       Impact factor: 5.157

Review 2.  Implications of the allosteric kinetics of cytochrome P450s.

Authors:  William M Atkins
Journal:  Drug Discov Today       Date:  2004-06-01       Impact factor: 7.851

3.  Crystal structures of human cytochrome P450 3A4 bound to metyrapone and progesterone.

Authors:  Pamela A Williams; Jose Cosme; Dijana Matak Vinkovic; Alison Ward; Hayley C Angove; Philip J Day; Clemens Vonrhein; Ian J Tickle; Harren Jhoti
Journal:  Science       Date:  2004-07-15       Impact factor: 47.728

4.  Conformational heterogeneity of cytochrome P450 3A4 revealed by high pressure spectroscopy.

Authors:  Dmitri R Davydov; James R Halpert; Jean-Paul Renaud; Gaston Hui Bon Hoa
Journal:  Biochem Biophys Res Commun       Date:  2003-12-05       Impact factor: 3.575

Review 5.  "Allosterism" in the elementary steps of the cytochrome P450 reaction cycle.

Authors:  Moon-Young Yoon; A Patricia Campbell; William M Atkins
Journal:  Drug Metab Rev       Date:  2004-05       Impact factor: 4.518

6.  Multisite kinetic analysis of interactions between prototypical CYP3A4 subgroup substrates: midazolam, testosterone, and nifedipine.

Authors:  Aleksandra Galetin; Stephen E Clarke; J Brian Houston
Journal:  Drug Metab Dispos       Date:  2003-09       Impact factor: 3.922

Review 7.  Progress towards prediction of human pharmacokinetic parameters from in vitro technologies.

Authors:  J Brian Houston; Aleksandra Galetin
Journal:  Drug Metab Rev       Date:  2003-11       Impact factor: 4.518

8.  An electrostatically driven conformational transition is involved in the mechanisms of substrate binding and cooperativity in cytochrome P450eryF.

Authors:  Dmitri R Davydov; Alexandra E Botchkareva; Santosh Kumar; You Qun He; James R Halpert
Journal:  Biochemistry       Date:  2004-06-01       Impact factor: 3.162

9.  The structure of human cytochrome P450 2C9 complexed with flurbiprofen at 2.0-A resolution.

Authors:  Michael R Wester; Jason K Yano; Guillaume A Schoch; Christine Yang; Keith J Griffin; C David Stout; Eric F Johnson
Journal:  J Biol Chem       Date:  2004-06-04       Impact factor: 5.157

10.  Structure of human microsomal cytochrome P450 2C8. Evidence for a peripheral fatty acid binding site.

Authors:  Guillaume A Schoch; Jason K Yano; Michael R Wester; Keith J Griffin; C David Stout; Eric F Johnson
Journal:  J Biol Chem       Date:  2003-12-15       Impact factor: 5.157

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  58 in total

1.  Single-molecule fluorescence spectroscopy using phospholipid bilayer nanodiscs.

Authors:  Abhinav Nath; Adam J Trexler; Peter Koo; Andrew D Miranker; William M Atkins; Elizabeth Rhoades
Journal:  Methods Enzymol       Date:  2010       Impact factor: 1.600

2.  Interactions among cytochromes P450 in microsomal membranes: oligomerization of cytochromes P450 3A4, 3A5, and 2E1 and its functional consequences.

Authors:  Dmitri R Davydov; Nadezhda Y Davydova; Elena V Sineva; James R Halpert
Journal:  J Biol Chem       Date:  2014-12-22       Impact factor: 5.157

3.  Allosteric activation of cytochrome P450 3A4 by α-naphthoflavone: branch point regulation revealed by isotope dilution analysis.

Authors:  Caleb M Woods; Cristina Fernandez; Kent L Kunze; William M Atkins
Journal:  Biochemistry       Date:  2011-10-28       Impact factor: 3.162

4.  Two-dimensional NMR and all-atom molecular dynamics of cytochrome P450 CYP119 reveal hidden conformational substates.

Authors:  Jed N Lampe; Relly Brandman; Santhosh Sivaramakrishnan; Paul R Ortiz de Montellano
Journal:  J Biol Chem       Date:  2010-01-22       Impact factor: 5.157

5.  Investigating the structural plasticity of a cytochrome P450: three-dimensional structures of P450 EryK and binding to its physiological substrate.

Authors:  Carmelinda Savino; Linda C Montemiglio; Giuliano Sciara; Adriana E Miele; Steven G Kendrew; Per Jemth; Stefano Gianni; Beatrice Vallone
Journal:  J Biol Chem       Date:  2009-07-22       Impact factor: 5.157

6.  Mixing apples and oranges: Analysis of heterotropic cooperativity in cytochrome P450 3A4.

Authors:  Daniel J Frank; Ilia G Denisov; Stephen G Sligar
Journal:  Arch Biochem Biophys       Date:  2009-06-26       Impact factor: 4.013

Review 7.  Current Approaches for Investigating and Predicting Cytochrome P450 3A4-Ligand Interactions.

Authors:  Irina F Sevrioukova; Thomas L Poulos
Journal:  Adv Exp Med Biol       Date:  2015       Impact factor: 2.622

8.  Correction to "Allosteric Interactions in Human Cytochrome P450 CYP3A4: The Role of Phenylalanine 213".

Authors:  Ilia G Denisov; Yelena V Grinkova; Prithviraj Nandigrami; Mrinal Shekhar; Emad Tajkhorshid; Stephen G Sligar
Journal:  Biochemistry       Date:  2019-06-06       Impact factor: 3.162

9.  Drug metabolism by CYP2C8.3 is determined by substrate dependent interactions with cytochrome P450 reductase and cytochrome b5.

Authors:  Rüdiger Kaspera; Suresh B Naraharisetti; Eric A Evangelista; Kristin D Marciante; Bruce M Psaty; Rheem A Totah
Journal:  Biochem Pharmacol       Date:  2011-06-24       Impact factor: 5.858

10.  Pivotal role of P450-P450 interactions in CYP3A4 allostery: the case of α-naphthoflavone.

Authors:  Dmitri R Davydov; Nadezhda Y Davydova; Elena V Sineva; Irina Kufareva; James R Halpert
Journal:  Biochem J       Date:  2013-07-15       Impact factor: 3.857

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