Literature DB >> 20517991

Diffraction techniques in structural biology.

Martin Egli1.   

Abstract

A detailed understanding of chemical and biological function and the mechanisms underlying the molecular activities ultimately requires atomic-resolution structural data. Diffraction-based techniques such as single-crystal X-ray crystallography, electron microscopy, and neutron diffraction are well established and they have paved the road to the stunning successes of modern-day structural biology. The major advances achieved in the last 20 years in all aspects of structural research, including sample preparation, crystallization, the construction of synchrotron and spallation sources, phasing approaches, and high-speed computing and visualization, now provide specialists and nonspecialists alike with a steady flow of molecular images of unprecedented detail. The present unit combines a general overview of diffraction methods with a detailed description of the process of a single-crystal X-ray structure determination experiment, from chemical synthesis or expression to phasing and refinement, analysis, and quality control. For novices it may serve as a stepping-stone to more in-depth treatises of the individual topics. Readers relying on structural information for interpreting functional data may find it a useful consumer guide.

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Year:  2010        PMID: 20517991      PMCID: PMC2917260          DOI: 10.1002/0471142700.nc0713s41

Source DB:  PubMed          Journal:  Curr Protoc Nucleic Acid Chem        ISSN: 1934-9270


  57 in total

1.  The Protein Data Bank.

Authors:  H M Berman; J Westbrook; Z Feng; G Gilliland; T N Bhat; H Weissig; I N Shindyalov; P E Bourne
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

Review 2.  Synchrotron crystallography.

Authors:  W A Hendrickson
Journal:  Trends Biochem Sci       Date:  2000-12       Impact factor: 13.807

Review 3.  Macromolecular electron microscopy in the era of structural genomics.

Authors:  W Baumeister; A C Steven
Journal:  Trends Biochem Sci       Date:  2000-12       Impact factor: 13.807

Review 4.  Automation of X-ray crystallography.

Authors:  E Abola; P Kuhn; T Earnest; R C Stevens
Journal:  Nat Struct Biol       Date:  2000-11

Review 5.  Single-molecule X-ray diffraction.

Authors:  J Hajdu
Journal:  Curr Opin Struct Biol       Date:  2000-10       Impact factor: 6.809

6.  A highly efficient 24-condition matrix for the crystallization of nucleic acid fragments.

Authors:  I Berger; C H Kang; N Sinha; M Wolters; A Rich
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1996-05-01

7.  Macromolecular structure determination by cryo-electron microscopy.

Authors:  H R Saibil
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-10

8.  Detection of alkali metal ions in DNA crystals using state-of-the-art X-ray diffraction experiments.

Authors:  V Tereshko; C J Wilds; G Minasov; T P Prakash; M A Maier; A Howard; Z Wawrzak; M Manoharan; M Egli
Journal:  Nucleic Acids Res       Date:  2001-03-01       Impact factor: 16.971

9.  Automated MAD and MIR structure solution.

Authors:  T C Terwilliger; J Berendzen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-04

Review 10.  Fluorescence resonance energy transfer as a structural tool for nucleic acids.

Authors:  D M Lilley; T J Wilson
Journal:  Curr Opin Chem Biol       Date:  2000-10       Impact factor: 8.822

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  1 in total

1.  Comparative analysis of inosine-substituted duplex DNA by circular dichroism and X-ray crystallography.

Authors:  Justin P Peters; Ewa A Kowal; Pradeep S Pallan; Martin Egli; L James Maher
Journal:  J Biomol Struct Dyn       Date:  2017-09-04
  1 in total

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