Literature DB >> 18799705

Real-time reverse-transcription loop-mediated isothermal amplification for rapid detection of rift valley Fever virus.

Christophe N Peyrefitte1, Laetitia Boubis, Daniel Coudrier, Michèle Bouloy, Marc Grandadam, Hugues J Tolou, Sébastien Plumet.   

Abstract

The development and validation of a one-step, single-tube, real-time accelerated reverse-transcription loop-mediated isothermal amplification (RT-LAMP) for the detection of the L RNA segment of Rift Valley fever virus (RVFV) are described. The assay was performed at a constant temperature (63 degrees C), with a real-time follow-up using a LightCycler and a double-stranded-DNA-intercalating fluorochrome. The assay is highly sensitive and comparable to real-time RT-PCR, with a detection limit of approximately 10 RNA copies per assay. However, the RT-LAMP assay is much faster than traditional RT-PCR and generates results in <30 min for most diluted samples. The specificity of the primers was established using other, related arboviruses as well as virus-containing and virus-free sera. The RT-LAMP assay reported here is thus a valuable tool for the rapid detection of RVFV in field diagnostic laboratories.

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Year:  2008        PMID: 18799705      PMCID: PMC2576582          DOI: 10.1128/JCM.01188-08

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN: 0095-1137            Impact factor:   5.948


  23 in total

1.  Loop-mediated isothermal amplification of DNA.

Authors:  T Notomi; H Okayama; H Masubuchi; T Yonekawa; K Watanabe; N Amino; T Hase
Journal:  Nucleic Acids Res       Date:  2000-06-15       Impact factor: 16.971

2.  Quantitative real-time PCR detection of Rift Valley fever virus and its application to evaluation of antiviral compounds.

Authors:  S Garcia; J M Crance; A Billecocq; A Peinnequin; A Jouan; M Bouloy; D Garin
Journal:  J Clin Microbiol       Date:  2001-12       Impact factor: 5.948

3.  Real-time reverse transcription loop-mediated isothermal amplification for rapid detection of West Nile virus.

Authors:  Manmohan Parida; Guillermo Posadas; Shingo Inoue; Futoshi Hasebe; Kouichi Morita
Journal:  J Clin Microbiol       Date:  2004-01       Impact factor: 5.948

4.  Accelerated reaction by loop-mediated isothermal amplification using loop primers.

Authors:  K Nagamine; T Hase; T Notomi
Journal:  Mol Cell Probes       Date:  2002-06       Impact factor: 2.365

5.  Complete genome analysis of 33 ecologically and biologically diverse Rift Valley fever virus strains reveals widespread virus movement and low genetic diversity due to recent common ancestry.

Authors:  Brian H Bird; Marina L Khristova; Pierre E Rollin; Thomas G Ksiazek; Stuart T Nichol
Journal:  J Virol       Date:  2006-12-27       Impact factor: 5.103

6.  CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.

Authors:  J D Thompson; D G Higgins; T J Gibson
Journal:  Nucleic Acids Res       Date:  1994-11-11       Impact factor: 16.971

Review 7.  Infections by viruses of the families Bunyaviridae and Filoviridae.

Authors:  H Zeller; M Bouloy
Journal:  Rev Sci Tech       Date:  2000-04       Impact factor: 1.181

8.  Single-tube and nested reverse transcriptase-polymerase chain reaction for detection of Rift Valley fever virus in human and animal sera.

Authors:  A A Sall; J Thonnon; O K Sene; A Fall; M Ndiaye; B Baudez; C Mathiot; M Bouloy
Journal:  J Virol Methods       Date:  2001-01       Impact factor: 2.014

9.  Dengue type 3 virus, Saint Martin, 2003-2004.

Authors:  Christophe N Peyrefitte; Boris A M Pastorino; Maël Bessaud; Patrick Gravier; Fabienne Tock; Patricia Couissinier-Paris; Jenny Martial; Patricia Huc-Anais; Raymond Césaire; Marc Grandadam; Hugues J Tolou
Journal:  Emerg Infect Dis       Date:  2005-05       Impact factor: 6.883

10.  Rift Valley fever virus infection among French troops in Chad.

Authors:  Jean Paul Durand; Michèle Bouloy; Laurent Richecoeur; Christophe Nicolas Peyrefitte; Hugues Tolou
Journal:  Emerg Infect Dis       Date:  2003-06       Impact factor: 6.883

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  23 in total

1.  Development of a panel of recombinase polymerase amplification assays for detection of biothreat agents.

Authors:  Milena Euler; Yongjie Wang; Doris Heidenreich; Pranav Patel; Oliver Strohmeier; Sydney Hakenberg; Matthias Niedrig; Frank T Hufert; Manfred Weidmann
Journal:  J Clin Microbiol       Date:  2013-01-23       Impact factor: 5.948

2.  Rapid genome detection of Schmallenberg virus and bovine viral diarrhea virus by use of isothermal amplification methods and high-speed real-time reverse transcriptase PCR.

Authors:  Andrea Aebischer; Kerstin Wernike; Bernd Hoffmann; Martin Beer
Journal:  J Clin Microbiol       Date:  2014-03-19       Impact factor: 5.948

3.  Rapid detection of newly isolated Tembusu-related Flavivirus by reverse-transcription loop-mediated isothermal amplification assay.

Authors:  Youling Wang; Xiaoyuan Yuan; Yufeng Li; Kexiang Yu; Jinxing Yang; Huaiying Xu; Yuxia Zhang; Kangzhen Yu; Ming Liao; Zhuoming Qin
Journal:  Virol J       Date:  2011-12-21       Impact factor: 4.099

Review 4.  Advances in Rift Valley fever research: insights for disease prevention.

Authors:  A Desiree LaBeaud; James W Kazura; Charles H King
Journal:  Curr Opin Infect Dis       Date:  2010-10       Impact factor: 4.915

Review 5.  Molecular biology and genetic diversity of Rift Valley fever virus.

Authors:  Tetsuro Ikegami
Journal:  Antiviral Res       Date:  2012-06-16       Impact factor: 5.970

6.  Rapid and specific detection of Asian- and African-lineage Zika viruses.

Authors:  Nunya Chotiwan; Connie D Brewster; Tereza Magalhaes; James Weger-Lucarelli; Nisha K Duggal; Claudia Rückert; Chilinh Nguyen; Selene M Garcia Luna; Joseph R Fauver; Barb Andre; Meg Gray; William C Black; Rebekah C Kading; Gregory D Ebel; Guillermina Kuan; Angel Balmaseda; Thomas Jaenisch; Ernesto T A Marques; Aaron C Brault; Eva Harris; Brian D Foy; Sandra L Quackenbush; Rushika Perera; Joel Rovnak
Journal:  Sci Transl Med       Date:  2017-05-03       Impact factor: 17.956

7.  Molecular Characterization of Increased Amplicon Lengths in SARS-CoV-2 Reverse Transcription Loop-Mediated Isothermal Amplification Assays.

Authors:  Scott W Tighe; Andrew F Hayden; Marcy L Kuentzel; Korin M Eckstrom; Jonathan Foox; Daniel L Vellone; Kristiaan H Finstad; Pheobe K Laaguiby; Jessica J Hoffman; Sridar V Chittur
Journal:  J Biomol Tech       Date:  2021-09

8.  Rift Valley fever virus(Bunyaviridae: Phlebovirus): an update on pathogenesis, molecular epidemiology, vectors, diagnostics and prevention.

Authors:  Michel Pepin; Michele Bouloy; Brian H Bird; Alan Kemp; Janusz Paweska
Journal:  Vet Res       Date:  2010 Nov-Dec       Impact factor: 3.683

9.  A one-step reverse transcription loop-mediated isothermal amplification for detection and discrimination of infectious bursal disease virus.

Authors:  Yongqiang Wang; Zhonghui Kang; Honglei Gao; Yulong Gao; Liting Qin; Huan Lin; Fei Yu; Xiaole Qi; Xiaomei Wang
Journal:  Virol J       Date:  2011-03-08       Impact factor: 4.099

10.  Detection of capripoxvirus DNA using a novel loop-mediated isothermal amplification assay.

Authors:  Lee Murray; Lorraine Edwards; Eeva S M Tuppurainen; Katarzyna Bachanek-Bankowska; Chris A L Oura; Valerie Mioulet; Donald P King
Journal:  BMC Vet Res       Date:  2013-05-01       Impact factor: 2.741

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