Literature DB >> 28469032

Rapid and specific detection of Asian- and African-lineage Zika viruses.

Nunya Chotiwan1,2, Connie D Brewster1, Tereza Magalhaes2,3, James Weger-Lucarelli1,2, Nisha K Duggal4, Claudia Rückert1,2, Chilinh Nguyen1,2, Selene M Garcia Luna1,2, Joseph R Fauver1,2, Barb Andre1, Meg Gray1,2, William C Black1,2, Rebekah C Kading1,2, Gregory D Ebel1,2, Guillermina Kuan5, Angel Balmaseda6, Thomas Jaenisch7,8, Ernesto T A Marques3,9, Aaron C Brault4, Eva Harris10, Brian D Foy1,2, Sandra L Quackenbush1, Rushika Perera1,2, Joel Rovnak11.   

Abstract

Understanding the dynamics of Zika virus transmission and formulating rational strategies for its control require precise diagnostic tools that are also appropriate for resource-poor environments. We have developed a rapid and sensitive loop-mediated isothermal amplification (LAMP) assay that distinguishes Zika viruses of Asian and African lineages. The assay does not detect chikungunya virus or flaviviruses such as dengue, yellow fever, or West Nile viruses. The assay conditions allowed direct detection of Zika virus RNA in cultured infected cells; in mosquitoes; in virus-spiked samples of human blood, plasma, saliva, urine, and semen; and in infected patient serum, plasma, and semen samples without the need for RNA isolation or reverse transcription. The assay offers rapid, specific, sensitive, and inexpensive detection of the Asian-lineage Zika virus strain that is currently circulating in the Western hemisphere, and can also detect the African-lineage Zika virus strain using separate, specific primers.
Copyright © 2017, American Association for the Advancement of Science.

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Year:  2017        PMID: 28469032      PMCID: PMC5654541          DOI: 10.1126/scitranslmed.aag0538

Source DB:  PubMed          Journal:  Sci Transl Med        ISSN: 1946-6234            Impact factor:   17.956


  50 in total

1.  Loop-mediated isothermal amplification of DNA.

Authors:  T Notomi; H Okayama; H Masubuchi; T Yonekawa; K Watanabe; N Amino; T Hase
Journal:  Nucleic Acids Res       Date:  2000-06-15       Impact factor: 16.971

2.  Real-time reverse transcription loop-mediated isothermal amplification for rapid detection of West Nile virus.

Authors:  Manmohan Parida; Guillermo Posadas; Shingo Inoue; Futoshi Hasebe; Kouichi Morita
Journal:  J Clin Microbiol       Date:  2004-01       Impact factor: 5.948

3.  Rapid detection and typing of dengue viruses from clinical samples by using reverse transcriptase-polymerase chain reaction.

Authors:  R S Lanciotti; C H Calisher; D J Gubler; G J Chang; A V Vorndam
Journal:  J Clin Microbiol       Date:  1992-03       Impact factor: 5.948

4.  Zika virus. I. Isolations and serological specificity.

Authors:  G W A DICK; S F KITCHEN; A J HADDOW
Journal:  Trans R Soc Trop Med Hyg       Date:  1952-09       Impact factor: 2.184

5.  Phylogeny of the genus Flavivirus.

Authors:  G Kuno; G J Chang; K R Tsuchiya; N Karabatsos; C B Cropp
Journal:  J Virol       Date:  1998-01       Impact factor: 5.103

6.  Results of a Zika Virus (ZIKV) Immunoglobulin M-Specific Diagnostic Assay Are Highly Correlated With Detection of Neutralizing Anti-ZIKV Antibodies in Neonates With Congenital Disease.

Authors:  Marli T Cordeiro; Carlos A A Brito; Lindomar J Pena; Priscila M S Castanha; Laura H V G Gil; Kennya G S Lopes; Rafael Dhalia; Jucille A Meneses; Ana C Ishigami; Luisa M Mello; Liciana X E Alencar; Klarissa M Guarines; Laura C Rodrigues; Ernesto T A Marques
Journal:  J Infect Dis       Date:  2016-10-05       Impact factor: 5.226

7.  Rapid and real-time detection of Chikungunya virus by reverse transcription loop-mediated isothermal amplification assay.

Authors:  M M Parida; S R Santhosh; P K Dash; N K Tripathi; V Lakshmi; N Mamidi; A Shrivastva; N Gupta; P Saxena; J Pradeep Babu; P V Lakshmana Rao; Kouichi Morita
Journal:  J Clin Microbiol       Date:  2006-11-29       Impact factor: 5.948

Review 8.  Zika Virus.

Authors:  Didier Musso; Duane J Gubler
Journal:  Clin Microbiol Rev       Date:  2016-07       Impact factor: 26.132

9.  Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.

Authors:  Matthew Kearse; Richard Moir; Amy Wilson; Steven Stones-Havas; Matthew Cheung; Shane Sturrock; Simon Buxton; Alex Cooper; Sidney Markowitz; Chris Duran; Tobias Thierer; Bruce Ashton; Peter Meintjes; Alexei Drummond
Journal:  Bioinformatics       Date:  2012-04-27       Impact factor: 6.937

10.  Single-Reaction Multiplex Reverse Transcription PCR for Detection of Zika, Chikungunya, and Dengue Viruses.

Authors:  Jesse J Waggoner; Lionel Gresh; Alisha Mohamed-Hadley; Gabriela Ballesteros; Maria Jose Vargas Davila; Yolanda Tellez; Malaya K Sahoo; Angel Balmaseda; Eva Harris; Benjamin A Pinsky
Journal:  Emerg Infect Dis       Date:  2016-07-15       Impact factor: 6.883

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  38 in total

1.  Switch-on the LAMP to spot Zika.

Authors:  Erick Mora-Cárdenas; Alessandro Marcello
Journal:  Ann Transl Med       Date:  2017-12

2.  LAMP assay for specific detection of Asian and African lineage Zika virus: will it meet the expectations?

Authors:  Yaniv Lustig; Danit Sofer; Musa Hindiyeh; Ella Mendelson
Journal:  Ann Transl Med       Date:  2018-02

Review 3.  The use of longitudinal cohorts for studies of dengue viral pathogenesis and protection.

Authors:  Leah C Katzelnick; Eva Harris
Journal:  Curr Opin Virol       Date:  2018-03-26       Impact factor: 7.090

4.  MRPrimerW2: an enhanced tool for rapid design of valid high-quality primers with multiple search modes for qPCR experiments.

Authors:  Hajin Jeon; Jeongmin Bae; Sang-Hyun Hwang; Kyu-Young Whang; Hyun-Seob Lee; Hyerin Kim; Min-Soo Kim
Journal:  Nucleic Acids Res       Date:  2019-07-02       Impact factor: 16.971

5.  Field-deployable viral diagnostics using CRISPR-Cas13.

Authors:  Cameron Myhrvold; Catherine A Freije; Jonathan S Gootenberg; Omar O Abudayyeh; Hayden C Metsky; Ann F Durbin; Max J Kellner; Amanda L Tan; Lauren M Paul; Leda A Parham; Kimberly F Garcia; Kayla G Barnes; Bridget Chak; Adriano Mondini; Mauricio L Nogueira; Sharon Isern; Scott F Michael; Ivette Lorenzana; Nathan L Yozwiak; Bronwyn L MacInnis; Irene Bosch; Lee Gehrke; Feng Zhang; Pardis C Sabeti
Journal:  Science       Date:  2018-04-27       Impact factor: 47.728

Review 6.  Current concerns and perspectives on Zika virus co-infection with arboviruses and HIV.

Authors:  Hussin A Rothan; Mehdi R M Bidokhti; Siddappa N Byrareddy
Journal:  J Autoimmun       Date:  2018-01-17       Impact factor: 7.094

7.  Single-cell nucleic acid profiling in droplets (SNAPD) enables high-throughput analysis of heterogeneous cell populations.

Authors:  Leland B Hyman; Clare R Christopher; Philip A Romero
Journal:  Nucleic Acids Res       Date:  2021-10-11       Impact factor: 16.971

8.  Detection of Zika virus using reverse-transcription LAMP coupled with reverse dot blot analysis in saliva.

Authors:  Maite Sabalza; Rubina Yasmin; Cheryl A Barber; Talita Castro; Daniel Malamud; Beum Jun Kim; Hui Zhu; Richard A Montagna; William R Abrams
Journal:  PLoS One       Date:  2018-02-05       Impact factor: 3.240

Review 9.  Advances in Diagnosis, Surveillance, and Monitoring of Zika Virus: An Update.

Authors:  Raj K Singh; Kuldeep Dhama; Kumaragurubaran Karthik; Ruchi Tiwari; Rekha Khandia; Ashok Munjal; Hafiz M N Iqbal; Yashpal S Malik; Rubén Bueno-Marí
Journal:  Front Microbiol       Date:  2018-01-19       Impact factor: 5.640

10.  Development of a Quantitative Loop-Mediated Isothermal Amplification Assay for the Rapid Detection of Novel Goose Parvovirus.

Authors:  Jing Yang; Hao Chen; Zhenzhong Wang; Xianglong Yu; Xiaoyu Niu; Yi Tang; Youxiang Diao
Journal:  Front Microbiol       Date:  2017-12-12       Impact factor: 5.640

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