Literature DB >> 18796636

MATERNALLY EXPRESSED PAB C-TERMINAL, a novel imprinted gene in Arabidopsis, encodes the conserved C-terminal domain of polyadenylate binding proteins.

Sushma Tiwari1, Reiner Schulz, Yoko Ikeda, Lindsay Dytham, Jaime Bravo, Lucille Mathers, Melissa Spielman, Plinio Guzmán, Rebecca J Oakey, Tetsu Kinoshita, Rod J Scott.   

Abstract

Parental imprinting is important for seed development, but few imprinted genes have been identified in plants. The four known imprinted genes in Arabidopsis thaliana encode transcriptional regulators. Here, we describe a novel imprinted gene, MATERNALLY EXPRESSED PAB C-TERMINAL (MPC), which encodes the C-terminal domain of poly(A) binding proteins (PABPs). PABPs play roles in mRNA stability and translation. MPC interacts with proteins that also interact with the C-terminal domain of typical PABPs, suggesting that MPC may regulate translation by modulating PABP activity. In the endosperm, MPC is expressed only from the maternal allele. Reduction of MPC expression affects seed development. In dna methyltransferase1 (met1) mutants, MPC is ectopically expressed, and the paternal allele is active in the endosperm. CGs in the 5' flanking region and gene body of MPC lose methylation in a met1 background. Both regions are required to confer imprinted reporter expression, suggesting that the gene body contains imprinting control region elements. In Arabidopsis, DEMETER (DME) activates expression of maternal alleles. MPC expression is reduced in flowers and seeds in a dme-4 mutant but only after fertilization in dme-1. We conclude that other factors along with DME promote MPC expression and that DME has indirect effects on imprinted gene expression in endosperm.

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Year:  2008        PMID: 18796636      PMCID: PMC2570725          DOI: 10.1105/tpc.108.061929

Source DB:  PubMed          Journal:  Plant Cell        ISSN: 1040-4651            Impact factor:   11.277


  50 in total

1.  One-way control of FWA imprinting in Arabidopsis endosperm by DNA methylation.

Authors:  Tetsu Kinoshita; Asuka Miura; Yeonhee Choi; Yuki Kinoshita; Xiaofeng Cao; Steven E Jacobsen; Robert L Fischer; Tetsuji Kakutani
Journal:  Science       Date:  2003-11-20       Impact factor: 47.728

Review 2.  Epigenetics: imprinting in plants and mammals--the same but different?

Authors:  Rod J Scott; Melissa Spielman
Journal:  Curr Biol       Date:  2004-03-09       Impact factor: 10.834

3.  Arabidopsis MET1 cytosine methyltransferase mutants.

Authors:  Mark W Kankel; Douglas E Ramsey; Trevor L Stokes; Susan K Flowers; Jeremy R Haag; Jeffrey A Jeddeloh; Nicole C Riddle; Michelle L Verbsky; Eric J Richards
Journal:  Genetics       Date:  2003-03       Impact factor: 4.562

4.  Unexpected complexity of poly(A)-binding protein gene families in flowering plants: three conserved lineages that are at least 200 million years old and possible auto- and cross-regulation.

Authors:  Dmitry A Belostotsky
Journal:  Genetics       Date:  2003-01       Impact factor: 4.562

5.  Imprinting of the MEA Polycomb gene is controlled by antagonism between MET1 methyltransferase and DME glycosylase.

Authors:  Wenyan Xiao; Mary Gehring; Yeonhee Choi; Linda Margossian; Hong Pu; John J Harada; Robert B Goldberg; Roger I Pennell; Robert L Fischer
Journal:  Dev Cell       Date:  2003-12       Impact factor: 12.270

6.  Genome-wide insertional mutagenesis of Arabidopsis thaliana.

Authors:  José M Alonso; Anna N Stepanova; Thomas J Leisse; Christopher J Kim; Huaming Chen; Paul Shinn; Denise K Stevenson; Justin Zimmerman; Pascual Barajas; Rosa Cheuk; Carmelita Gadrinab; Collen Heller; Albert Jeske; Eric Koesema; Cristina C Meyers; Holly Parker; Lance Prednis; Yasser Ansari; Nathan Choy; Hashim Deen; Michael Geralt; Nisha Hazari; Emily Hom; Meagan Karnes; Celene Mulholland; Ral Ndubaku; Ian Schmidt; Plinio Guzman; Laura Aguilar-Henonin; Markus Schmid; Detlef Weigel; David E Carter; Trudy Marchand; Eddy Risseeuw; Debra Brogden; Albana Zeko; William L Crosby; Charles C Berry; Joseph R Ecker
Journal:  Science       Date:  2003-08-01       Impact factor: 47.728

7.  The Polycomb-group protein MEDEA regulates seed development by controlling expression of the MADS-box gene PHERES1.

Authors:  Claudia Köhler; Lars Hennig; Charles Spillane; Stephane Pien; Wilhelm Gruissem; Ueli Grossniklaus
Journal:  Genes Dev       Date:  2003-06-15       Impact factor: 11.361

Review 8.  Structure and function of poly(A) binding proteins.

Authors:  Uwe Kühn; Elmar Wahle
Journal:  Biochim Biophys Acta       Date:  2004-05-25

9.  DEMETER, a DNA glycosylase domain protein, is required for endosperm gene imprinting and seed viability in arabidopsis.

Authors:  Yeonhee Choi; Mary Gehring; Lianna Johnson; Mike Hannon; John J Harada; Robert B Goldberg; Steven E Jacobsen; Robert L Fischer
Journal:  Cell       Date:  2002-07-12       Impact factor: 41.582

Review 10.  Poly(A)-binding proteins: multifunctional scaffolds for the post-transcriptional control of gene expression.

Authors:  David A Mangus; Matthew C Evans; Allan Jacobson
Journal:  Genome Biol       Date:  2003-07-01       Impact factor: 13.583

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  45 in total

Review 1.  Regulation and flexibility of genomic imprinting during seed development.

Authors:  Michael T Raissig; Célia Baroux; Ueli Grossniklaus
Journal:  Plant Cell       Date:  2011-01-28       Impact factor: 11.277

2.  Apomictic and sexual ovules of Boechera display heterochronic global gene expression patterns.

Authors:  Timothy F Sharbel; Marie-Luise Voigt; José M Corral; Giulio Galla; Jochen Kumlehn; Christian Klukas; Falk Schreiber; Heiko Vogel; Björn Rotter
Journal:  Plant Cell       Date:  2010-03-19       Impact factor: 11.277

3.  Regulation of Parent-of-Origin Allelic Expression in the Endosperm.

Authors:  Karina S Hornslien; Jason R Miller; Paul E Grini
Journal:  Plant Physiol       Date:  2019-05-07       Impact factor: 8.340

Review 4.  Nuclear behavior, cell polarity, and cell specification in the female gametophyte.

Authors:  Stefanie Sprunck; Rita Gross-Hardt
Journal:  Sex Plant Reprod       Date:  2011-02-19

5.  Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm.

Authors:  Xiupeng Mei; Chaoxian Liu; Tingting Yu; Xiaoli Liu; De Xu; Jiuguang Wang; Guoqiang Wang; Yilin Cai
Journal:  Mol Genet Genomics       Date:  2015-04-08       Impact factor: 3.291

6.  Widespread Contamination of Arabidopsis Embryo and Endosperm Transcriptome Data Sets.

Authors:  Michael A Schon; Michael D Nodine
Journal:  Plant Cell       Date:  2017-03-17       Impact factor: 11.277

7.  Widespread dynamic DNA methylation in response to biotic stress.

Authors:  Robert H Dowen; Mattia Pelizzola; Robert J Schmitz; Ryan Lister; Jill M Dowen; Joseph R Nery; Jack E Dixon; Joseph R Ecker
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-25       Impact factor: 11.205

8.  The Armadillo repeat gene ZAK IXIK promotes Arabidopsis early embryo and endosperm development through a distinctive gametophytic maternal effect.

Authors:  Quy A Ngo; Celia Baroux; Daniela Guthörl; Peter Mozerov; Margaret A Collinge; Venkatesan Sundaresan; Ueli Grossniklaus
Journal:  Plant Cell       Date:  2012-10-12       Impact factor: 11.277

9.  Parental genome dosage imbalance deregulates imprinting in Arabidopsis.

Authors:  Pauline E Jullien; Frédéric Berger
Journal:  PLoS Genet       Date:  2010-03-19       Impact factor: 5.917

10.  The application of restriction landmark genome scanning method for surveillance of non-mendelian inheritance in f(1) hybrids.

Authors:  Tomoko Takamiya; Saeko Hosobuchi; Tomotsugu Noguchi; Andrew H Paterson; Hiroshi Iijima; Yasufumi Murakami; Hisato Okuizumi
Journal:  Comp Funct Genomics       Date:  2010-01-27
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