Literature DB >> 18789407

Small RNA-directed heterochromatin formation in the context of development: what flies might learn from fission yeast.

Kathryn L Huisinga1, Sarah C R Elgin.   

Abstract

A link between the RNAi system and heterochromatin formation has been established in several model organisms including Schizosaccharomyces pombe and Arabidopsis thaliana. However, the data to support a role for small RNAs and the associated machinery in transcriptional gene silencing in animal systems is more tenuous. Using the S. pombe system as a model, we analyze the role of small RNA pathway components and associated small RNAs in regulating transposable elements and potentially directing heterochromatin formation at these elements in Drosophila melanogaster.

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Year:  2008        PMID： 18789407      PMCID： PMC2633771          DOI： 10.1016/j.bbagrm.2008.08.002

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN： 0006-3002


  142 in total

1.  Retraction: RNA-interference-directed chromatin modification coupled to RNA polymerase II transcription.

Authors:  Vera Schramke; Daniel M Sheedy; Ahmet M Denli; Carolina Bonila; Karl Ekwall; Gregory J Hannon; Robin C Allshire
Journal:  Nature       Date:  2005-10-13       Impact factor: 49.962

2.  Essential function in vivo for Dicer-2 in host defense against RNA viruses in drosophila.

Authors:  Delphine Galiana-Arnoux; Catherine Dostert; Anette Schneemann; Jules A Hoffmann; Jean-Luc Imler
Journal:  Nat Immunol       Date:  2006-03-23       Impact factor: 25.606

3.  RNA interference: endogenous siRNAs derived from transposable elements.

Authors:  Darren J Obbard; David J Finnegan
Journal:  Curr Biol       Date:  2008-07-08       Impact factor: 10.834

4.  A role of the Drosophila homeless gene in repression of Stellate in male meiosis.

Authors:  W Stapleton; S Das; B D McKee
Journal:  Chromosoma       Date:  2001-07       Impact factor: 4.316

5.  Drosophila PIWI associates with chromatin and interacts directly with HP1a.

Authors:  Brent Brower-Toland; Seth D Findley; Ling Jiang; Li Liu; Hang Yin; Monica Dus; Pei Zhou; Sarah C R Elgin; Haifan Lin
Journal:  Genes Dev       Date:  2007-09-15       Impact factor: 11.361

6.  A chromodomain protein, Chp1, is required for the establishment of heterochromatin in fission yeast.

Authors:  Mahito Sadaie; Tetsushi Iida; Takeshi Urano; Jun-Ichi Nakayama
Journal:  EMBO J       Date:  2004-09-16       Impact factor: 11.598

7.  Epigenetic regulation of the Drosophila chromosome 4 by the histone H3K9 methyltransferase dSETDB1.

Authors:  Tsai-Yu Tzeng; Chi-Hua Lee; Li-Wei Chan; C-K James Shen
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-25       Impact factor: 11.205

8.  The Drosophila SET domain encoding gene dEset is essential for proper development.

Authors:  Marianne Stabell; Mona Bjørkmo; Reidunn B Aalen; Andrew Lambertsson
Journal:  Hereditas       Date:  2006-12       Impact factor: 3.271

9.  An endogenous small interfering RNA pathway in Drosophila.

Authors:  Benjamin Czech; Colin D Malone; Rui Zhou; Alexander Stark; Catherine Schlingeheyde; Monica Dus; Norbert Perrimon; Manolis Kellis; James A Wohlschlegel; Ravi Sachidanandam; Gregory J Hannon; Julius Brennecke
Journal:  Nature       Date:  2008-05-07       Impact factor: 49.962

10.  Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila.

Authors:  Julius Brennecke; Alexei A Aravin; Alexander Stark; Monica Dus; Manolis Kellis; Ravi Sachidanandam; Gregory J Hannon
Journal:  Cell       Date:  2007-03-08       Impact factor: 41.582
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  16 in total

Review 1.  Minireview: Switching on progesterone receptor expression with duplex RNA.

Authors:  Bethany A Janowski; David R Corey
Journal:  Mol Endocrinol       Date:  2010-06-30

Review 2.  Constitutive heterochromatin: a surprising variety of expressed sequences.

Authors:  Patrizio Dimitri; Ruggiero Caizzi; Ennio Giordano; Maria Carmela Accardo; Giovanna Lattanzi; Giuseppe Biamonti
Journal:  Chromosoma       Date:  2009-05-02       Impact factor: 4.316

Review 3.  Position-effect variegation, heterochromatin formation, and gene silencing in Drosophila.

Authors:  Sarah C R Elgin; Gunter Reuter
Journal:  Cold Spring Harb Perspect Biol       Date:  2013-08-01       Impact factor: 10.005

4.  RNA editing regulates transposon-mediated heterochromatic gene silencing.

Authors:  Yiannis A Savva; James E C Jepson; Yao-Jen Chang; Rachel Whitaker; Brian C Jones; Georges St Laurent; Michael R Tackett; Philipp Kapranov; Nan Jiang; Guyu Du; Stephen L Helfand; Robert A Reenan
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

5.  The endogenous siRNA pathway is involved in heterochromatin formation in Drosophila.

Authors:  Delphine Fagegaltier; Anne-Laure Bougé; Bassam Berry; Emilie Poisot; Odile Sismeiro; Jean-Yves Coppée; Laurent Théodore; Olivier Voinnet; Christophe Antoniewski
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-30       Impact factor: 11.205

Review 6.  RNA interference and heterochromatin assembly.

Authors:  Tom Volpe; Robert A Martienssen
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-09-01       Impact factor: 10.005

7.  Production of artificial piRNAs in flies and mice.

Authors:  Felix Muerdter; Ivan Olovnikov; Antoine Molaro; Nikolay V Rozhkov; Benjamin Czech; Assaf Gordon; Gregory J Hannon; Alexei A Aravin
Journal:  RNA       Date:  2011-11-17       Impact factor: 4.942

Review 8.  The piRNA pathway in flies: highlights and future directions.

Authors:  Paloma M Guzzardo; Felix Muerdter; Gregory J Hannon
Journal:  Curr Opin Genet Dev       Date:  2013-01-11       Impact factor: 5.578

9.  Recurrent and recent selective sweeps in the piRNA pathway.

Authors:  Alfred Simkin; Alex Wong; Yu-Ping Poh; William E Theurkauf; Jeffrey D Jensen
Journal:  Evolution       Date:  2013-01-17       Impact factor: 3.694

10.  Antisense Transcription of Retrotransposons in Drosophila: An Origin of Endogenous Small Interfering RNA Precursors.

Authors:  Joseph Russo; Andrew W Harrington; Mindy Steiniger
Journal:  Genetics       Date:  2015-11-03       Impact factor: 4.562
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