Literature DB >> 18766469

Enzymes used in molecular biology: a useful guide.

Laure Rittié1, Bernard Perbal.   

Abstract

Since molecular cloning has become routine laboratory technique, manufacturers offer countless sources of enzymes to generate and manipulate nucleic acids. Thus, selecting the appropriate enzyme for a specific task may seem difficult to the novice. This review aims at providing the readers with some cues for understanding the function and specificities of the different sources of polymerases, ligases, nucleases, phosphatases, methylases, and topoisomerases used for molecular cloning. We provide a description of the most commonly used enzymes of each group, and explain their properties and mechanism of action. By pointing out key requirements for each enzymatic activity and clarifying their limitations, we aim at guiding the reader in selecting appropriate enzymatic source and optimal experimental conditions for molecular cloning experiments.

Year:  2008        PMID: 18766469      PMCID: PMC2570007          DOI: 10.1007/s12079-008-0026-2

Source DB:  PubMed          Journal:  J Cell Commun Signal        ISSN: 1873-9601            Impact factor:   5.782


  161 in total

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Journal:  J Biol Chem       Date:  1962-02       Impact factor: 5.157

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Journal:  Biochim Biophys Acta       Date:  1962-05-14

5.  Functional domains of an ATP-dependent DNA ligase.

Authors:  A J Doherty; D B Wigley
Journal:  J Mol Biol       Date:  1999-01-08       Impact factor: 5.469

6.  Functional domains of an NAD+-dependent DNA ligase.

Authors:  D J Timson; D B Wigley
Journal:  J Mol Biol       Date:  1999-01-08       Impact factor: 5.469

Review 7.  Resistance and cross-resistance with saquinavir and other HIV protease inhibitors: theory and practice.

Authors:  N A Roberts; J C Craig; J Sheldon
Journal:  AIDS       Date:  1998-03-26       Impact factor: 4.177

8.  Fluorescence-, isotope- or biotin-labeling of the 5 '-end of single-stranded DNA/RNA using T4 RNA ligase.

Authors:  Y Kinoshita; K Nishigaki; Y Husimi
Journal:  Nucleic Acids Res       Date:  1997-09-15       Impact factor: 16.971

9.  Optimization of Dnase I removal of contaminating DNA from RNA for use in quantitative RNA-PCR.

Authors:  Z Huang; M J Fasco; L S Kaminsky
Journal:  Biotechniques       Date:  1996-06       Impact factor: 1.993

10.  The pnk/pnl gene (ORF 86) of Autographa californica nucleopolyhedrovirus is a non-essential, immediate early gene.

Authors:  D Durantel; L Croizier; M D Ayres; G Croizier; R D Possee; M López-Ferber
Journal:  J Gen Virol       Date:  1998-03       Impact factor: 3.891

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  24 in total

1.  A quick and effective in-house method of DNA purification from agarose gel, suitable for sequencing.

Authors:  Obrador-Sánchez José Abraham; Tzec-Sima Miguel; Higuera-Ciapara Inocencio; Canto-Canché Blondy
Journal:  3 Biotech       Date:  2017-06-29       Impact factor: 2.406

2.  Identification of host RNAs that interact with EBV noncoding RNA EBER2.

Authors:  Adalena V Nanni; Nara Lee
Journal:  RNA Biol       Date:  2018-09-18       Impact factor: 4.652

3.  Enzymatic synthesis and modification of high molecular weight DNA using terminal deoxynucleotidyl transferase.

Authors:  Sonal Deshpande; Yunqi Yang; Ashutosh Chilkoti; Stefan Zauscher
Journal:  Methods Enzymol       Date:  2019-08-30       Impact factor: 1.600

Review 4.  Magnesium magnetic isotope effects in microbiology.

Authors:  Ulyana G Letuta
Journal:  Arch Microbiol       Date:  2021-02-21       Impact factor: 2.552

Review 5.  Cross-Regulation between Bacteria and Phages at a Posttranscriptional Level.

Authors:  Shoshy Altuvia; Gisela Storz; Kai Papenfort
Journal:  Microbiol Spectr       Date:  2018-07

6.  High-resolution mapping of DNA polymerase fidelity using nucleotide imbalances and next-generation sequencing.

Authors:  Alexandra M de Paz; Thaddeus R Cybulski; Adam H Marblestone; Bradley M Zamft; George M Church; Edward S Boyden; Konrad P Kording; Keith E J Tyo
Journal:  Nucleic Acids Res       Date:  2018-07-27       Impact factor: 16.971

7.  Variation in the number of nucleoli and incomplete homogenization of 18S ribosomal DNA sequences in leaf cells of the cultivated Oriental ginseng (Panax ginseng Meyer).

Authors:  Galina N Chelomina; Konstantin V Rozhkovan; Anastasia N Voronova; Olga L Burundukova; Tamara I Muzarok; Yuri N Zhuravlev
Journal:  J Ginseng Res       Date:  2015-07-21       Impact factor: 6.060

Review 8.  Nucleic acids for ultra-sensitive protein detection.

Authors:  Kris P F Janssen; Karel Knez; Dragana Spasic; Jeroen Lammertyn
Journal:  Sensors (Basel)       Date:  2013-01-21       Impact factor: 3.576

9.  Loop-mediated isothermal amplification assay for the rapid detection of Staphylococcus aureus.

Authors:  King Ting Lim; Cindy Shuan Ju Teh; Kwai Lin Thong
Journal:  Biomed Res Int       Date:  2013-01-15       Impact factor: 3.411

10.  Where does transcription start? 5'-RACE adapted to next-generation sequencing.

Authors:  Fleur A D Leenen; Sara Vernocchi; Oliver E Hunewald; Stephanie Schmitz; Anne M Molitor; Claude P Muller; Jonathan D Turner
Journal:  Nucleic Acids Res       Date:  2015-11-28       Impact factor: 16.971

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