Literature DB >> 31630739

Enzymatic synthesis and modification of high molecular weight DNA using terminal deoxynucleotidyl transferase.

Sonal Deshpande1, Yunqi Yang2, Ashutosh Chilkoti3, Stefan Zauscher4.   

Abstract

The recognition that nucleic acids can be used as polymeric materials led to the blossoming of the field of DNA nanotechnology, with a broad range of applications in biotechnology, biosensors, diagnostics, and drug delivery. These applications require efficient methods to synthesize and chemically modify high molecular weight DNA. Here, we discuss terminal deoxynucleotidyl transferase (TdT)-catalyzed enzymatic polymerization (TcEP) as an alternative to conventional enzymatic and solid-phase DNA synthesis. We describe biochemical requirements for TcEP and provide step-by-step protocols to carry out TcEP in solution and from surfaces.
© 2019 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Deoxynucleotidyl triphosphates (dNTPs); Deoxyribonucleic acid (DNA); Surface initiated enzymatic polymerization (SIEP); TdT-catalyzed enzymatic polymerization (TcEP); Terminal deoxynucleotidyl transferase (TdT); Unnatural nucleotides

Mesh:

Substances:

Year:  2019        PMID: 31630739      PMCID: PMC7241426          DOI: 10.1016/bs.mie.2019.07.044

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  58 in total

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Authors:  Pengjuan Wang; Ying Wan; Shengyuan Deng; Shulin Yang; Yan Su; Chunhai Fan; Ali Aldalbahi; Xiaolei Zuo
Journal:  Biosens Bioelectron       Date:  2016-07-09       Impact factor: 10.618

5.  Highly sensitive and selective electrochemical detection of Hg(2+) through surface-initiated enzymatic polymerization.

Authors:  Chenyang Mei; Dajie Lin; Chengchao Fan; Aili Liu; Shun Wang; Jichang Wang
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6.  Spectroscopic study of a DNA brush synthesized in situ by surface initiated enzymatic polymerization.

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Journal:  J Phys Chem B       Date:  2013-08-15       Impact factor: 2.991

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Authors:  Renpeng Gu; Thomas Oweida; Yaroslava G Yingling; Ashutosh Chilkoti; Stefan Zauscher
Journal:  Biomacromolecules       Date:  2018-07-27       Impact factor: 6.988

8.  Identification of programmed cell death in situ via specific labeling of nuclear DNA fragmentation.

Authors:  Y Gavrieli; Y Sherman; S A Ben-Sasson
Journal:  J Cell Biol       Date:  1992-11       Impact factor: 10.539

9.  Terminator-free template-independent enzymatic DNA synthesis for digital information storage.

Authors:  Henry H Lee; Reza Kalhor; Naveen Goela; Jean Bolot; George M Church
Journal:  Nat Commun       Date:  2019-06-03       Impact factor: 14.919

10.  2-Substituted dATP Derivatives as Building Blocks for Polymerase-Catalyzed Synthesis of DNA Modified in the Minor Groove.

Authors:  Ján Matyašovský; Pavla Perlíková; Vincent Malnuit; Radek Pohl; Michal Hocek
Journal:  Angew Chem Int Ed Engl       Date:  2016-11-23       Impact factor: 15.336

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  3 in total

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Authors:  Aleksandra A Kuznetsova; Timofey E Tyugashev; Irina V Alekseeva; Nadezhda A Timofeyeva; Olga S Fedorova; Nikita A Kuznetsov
Journal:  Life Sci Alliance       Date:  2022-08-01

2.  The Protein-Templated Synthesis of Enzyme-Generated Aptamers.

Authors:  Julio Vacacela; Anna-Lisa Schaap-Johansen; Patricia Manikova; Paolo Marcatili; Marta Prado; Yi Sun; Jon Ashley
Journal:  Angew Chem Int Ed Engl       Date:  2022-03-04       Impact factor: 16.823

3.  Programmable Site-Specific Functionalization of DNA Origami with Polynucleotide Brushes.

Authors:  Yunqi Yang; Qinyi Lu; Chao-Min Huang; Hongji Qian; Yunlong Zhang; Sonal Deshpande; Gaurav Arya; Yonggang Ke; Stefan Zauscher
Journal:  Angew Chem Int Ed Engl       Date:  2021-08-24       Impact factor: 16.823

  3 in total

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