Literature DB >> 18762444

Tensor classification of N-point correlation function features for histology tissue segmentation.

Kishore Mosaliganti1, Firdaus Janoos, Okan Irfanoglu, Randall Ridgway, Raghu Machiraju, Kun Huang, Joel Saltz, Gustavo Leone, Michael Ostrowski.   

Abstract

In this paper, we utilize the N-point correlation functions (N-pcfs) to construct an appropriate feature space for achieving tissue segmentation in histology-stained microscopic images. The N-pcfs estimate microstructural constituent packing densities and their spatial distribution in a tissue sample. We represent the multi-phase properties estimated by the N-pcfs in a tensor structure. Using a variant of higher-order singular value decomposition (HOSVD) algorithm, we realize a robust classifier that provides a multi-linear description of the tensor feature space. Validated results of the segmentation are presented in a case-study that focuses on understanding the genetic phenotyping differences in mouse placentae.

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Year:  2008        PMID: 18762444      PMCID: PMC4664199          DOI: 10.1016/j.media.2008.06.020

Source DB:  PubMed          Journal:  Med Image Anal        ISSN: 1361-8415            Impact factor:   8.545


  15 in total

1.  Extra-embryonic function of Rb is essential for embryonic development and viability.

Authors:  Lizhao Wu; Alain de Bruin; Harold I Saavedra; Maja Starovic; Anthony Trimboli; Ying Yang; Jana Opavska; Pamela Wilson; John C Thompson; Michael C Ostrowski; Thomas J Rosol; Laura A Woollett; Michael Weinstein; James C Cross; Michael L Robinson; Gustavo Leone
Journal:  Nature       Date:  2003-02-27       Impact factor: 49.962

2.  Automatic segmentation of histological structures in mammary gland tissue sections.

Authors:  R Fernandez-Gonzalez; T Deschamps; A Idica; R Malladi; C Ortiz de Solorzano
Journal:  J Biomed Opt       Date:  2004 May-Jun       Impact factor: 3.170

3.  I2 imaging: cancer biology and the tumor microenvironment.

Authors:  Bonnie F Sloane; Robert J Gillies; Suresh Mohla; John A Sogn; Anne E Menkens; Daniel C Sullivan
Journal:  Cancer Res       Date:  2006-11-17       Impact factor: 12.701

4.  Reconstruct: a free editor for serial section microscopy.

Authors:  J C Fiala
Journal:  J Microsc       Date:  2005-04       Impact factor: 1.758

5.  A hybrid framework for 3D medical image segmentation.

Authors:  Ting Chen; Dimitris Metaxas
Journal:  Med Image Anal       Date:  2005-12       Impact factor: 8.545

6.  Thin structure segmentation and visualization in three-dimensional biomedical images: a shape-based approach.

Authors:  Adam Huang; Gregory M Nielson; Anshuman Razdan; Gerald E Farin; D Page Baluch; David G Capco
Journal:  IEEE Trans Vis Comput Graph       Date:  2006 Jan-Feb       Impact factor: 4.579

7.  Rb is critical in a mammalian tissue stem cell population.

Authors:  Pamela L Wenzel; Lizhao Wu; Alain de Bruin; Jean-Leon Chong; Wen-Yi Chen; Geoffrey Dureska; Emily Sites; Tony Pan; Ashish Sharma; Kun Huang; Randall Ridgway; Kishore Mosaliganti; Richard Sharp; Raghu Machiraju; Joel Saltz; Hideyuki Yamamoto; James C Cross; Michael L Robinson; Gustavo Leone
Journal:  Genes Dev       Date:  2007-01-01       Impact factor: 11.361

8.  Reslicing axially sampled 3D shapes using elliptic Fourier descriptors.

Authors:  Yongwon Jeong; Richard J Radke
Journal:  Med Image Anal       Date:  2007-01-09       Impact factor: 8.545

9.  Virtual mouse placenta: tissue layer segmentation.

Authors:  Tony Pan; Kun Huang
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2005

10.  Three-dimensional reconstruction and quantification of cervical carcinoma invasion fronts from histological serial sections.

Authors:  Ulf-Dietrich Braumann; Jens-Peer Kuska; Jens Einenkel; Lars-Christian Horn; Markus Löffler; Michael Höckel
Journal:  IEEE Trans Med Imaging       Date:  2005-10       Impact factor: 10.048

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  8 in total

1.  Detection of spatially correlated objects in 3D images using appearance models and coupled active contours.

Authors:  Kishore Mosaliganti; Arnaud Gelas; Alexandre Gouaillard; Ramil Noche; Nikolaus Obholzer; Sean Megason
Journal:  Med Image Comput Comput Assist Interv       Date:  2009

2.  TISSUE LEVEL SEGMENTATION AND TRACKING OF BIOLOGICAL STRUCTURES IN MICROSCOPIC IMAGES BASED ON DENSITY MAPS.

Authors:  K Mosaliganti; A Gelas; A Gouaillard; Sean G Megason
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2009

3.  Two-Point Correlation as a Feature for Histology Images: Feature Space Structure and Correlation Updating.

Authors:  Lee Cooper; Joel Saltz; Raghu Machiraju; Kun Huang
Journal:  Conf Comput Vis Pattern Recognit Workshops       Date:  2010

4.  Digital Pathology: Data-Intensive Frontier in Medical Imaging: Health-information sharing, specifically of digital pathology, is the subject of this paper which discusses how sharing the rich images in pathology can stretch the capabilities of all otherwise well-practiced disciplines.

Authors:  Lee A D Cooper; Alexis B Carter; Alton B Farris; Fusheng Wang; Jun Kong; David A Gutman; Patrick Widener; Tony C Pan; Sharath R Cholleti; Ashish Sharma; Tahsin M Kurc; Daniel J Brat; Joel H Saltz
Journal:  Proc IEEE Inst Electr Electron Eng       Date:  2012-04       Impact factor: 10.961

5.  A supervised learning framework for pancreatic islet segmentation with multi-scale color-texture features and rolling guidance filters.

Authors:  Yue Huang; Chi Liu; John F Eisses; Sohail Z Husain; Gustavo K Rohde
Journal:  Cytometry A       Date:  2016-08-25       Impact factor: 4.355

6.  Acceleration of Two Point Correlation Function Calculation for Pathology Image Segmentation.

Authors:  Lee A D Cooper; Joel H Saltz; Umit Catalyurek; Kun Huang
Journal:  Proc IEEE Int Conf Healthc Inform Imaging Syst Biol       Date:  2011-10-27

Review 7.  Novel genotype-phenotype associations in human cancers enabled by advanced molecular platforms and computational analysis of whole slide images.

Authors:  Lee A D Cooper; Jun Kong; David A Gutman; William D Dunn; Michael Nalisnik; Daniel J Brat
Journal:  Lab Invest       Date:  2015-01-19       Impact factor: 5.662

8.  Quantifying local heterogeneity via morphologic scale: Distinguishing tumoral from stromal regions.

Authors:  Andrew Janowczyk; Sharat Chandran; Anant Madabhushi
Journal:  J Pathol Inform       Date:  2013-03-30
  8 in total

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