Literature DB >> 27560544

A supervised learning framework for pancreatic islet segmentation with multi-scale color-texture features and rolling guidance filters.

Yue Huang1,2, Chi Liu2, John F Eisses3, Sohail Z Husain3, Gustavo K Rohde4,5.   

Abstract

Islet cell quantification and function is important for developing novel therapeutic interventions for diabetes. Existing methods of pancreatic islet segmentation in histopathological images depend strongly on cell/nuclei detection, and thus are limited due to a wide variance in the appearance of pancreatic islets. In this paper, we propose a supervised learning pipeline to segment pancreatic islets in histopathological images, which does not require cell detection. The proposed framework firstly partitions images into superpixels, and then extracts multi-scale color-texture features from each superpixel and processes these features using rolling guidance filters, in order to simultaneously reduce inter-class ambiguity and intra-class variation. Finally, a linear support vector machine (SVM) is trained and applied to segment the testing images. A total of 23 hematoxylin-and-eosin-stained histopathological images with pancreatic islets are used for verifying the framework. With an average accuracy of 95%, training time of 20 min and testing time of 1 min per image, the proposed framework outperforms existing approaches with better segmentation performance and lower computational cost.
© 2016 International Society for Advancement of Cytometry. © 2016 International Society for Advancement of Cytometry.

Entities:  

Keywords:  histopathological image segmentation; multi-scale features; pancreatic islet; rolling guidance filter; supervised learning

Mesh:

Year:  2016        PMID: 27560544      PMCID: PMC5515086          DOI: 10.1002/cyto.a.22929

Source DB:  PubMed          Journal:  Cytometry A        ISSN: 1552-4922            Impact factor:   4.355


  26 in total

1.  Graph-based pancreatic islet segmentation for early type 2 diabetes mellitus on histopathological tissue.

Authors:  Xenofon Floros; Thomas J Fuchs; Markus P Rechsteiner; Giatgen Spinas; Holger Moch; Joachim M Buhmann
Journal:  Med Image Comput Comput Assist Interv       Date:  2009

2.  Histopathology tissue segmentation by combining fuzzy clustering with multiphase vector level sets.

Authors:  Filiz Bunyak; Adel Hafiane; Kannappan Palaniappan
Journal:  Adv Exp Med Biol       Date:  2011       Impact factor: 2.622

3.  Valproic Acid Limits Pancreatic Recovery after Pancreatitis by Inhibiting Histone Deacetylases and Preventing Acinar Redifferentiation Programs.

Authors:  John F Eisses; Angela Criscimanna; Zachary R Dionise; Abrahim I Orabi; Tanveer A Javed; Sheharyar Sarwar; Shunqian Jin; Lili Zhou; Sucha Singh; Minakshi Poddar; Amy W Davis; Akif Burak Tosun; John A Ozolek; Mark E Lowe; Satdarshan P Monga; Gustavo K Rohde; Farzad Esni; Sohail Z Husain
Journal:  Am J Pathol       Date:  2015-10-23       Impact factor: 4.307

4.  Partitioning histopathological images: an integrated framework for supervised color-texture segmentation and cell splitting.

Authors:  Hui Kong; Metin Gurcan; Kamel Belkacem-Boussaid
Journal:  IEEE Trans Med Imaging       Date:  2011-04-11       Impact factor: 10.048

5.  Assessment of human pancreatic islet architecture and composition by laser scanning confocal microscopy.

Authors:  Marcela Brissova; Michael J Fowler; Wendell E Nicholson; Anita Chu; Boaz Hirshberg; David M Harlan; Alvin C Powers
Journal:  J Histochem Cytochem       Date:  2005-05-27       Impact factor: 2.479

6.  Prostate histopathology: learning tissue component histograms for cancer detection and classification.

Authors:  Lena Gorelick; Olga Veksler; Mena Gaed; Jose A Gomez; Madeleine Moussa; Glenn Bauman; Aaron Fenster; Aaron D Ward
Journal:  IEEE Trans Med Imaging       Date:  2013-05-31       Impact factor: 10.048

Review 7.  Diabetes mellitus and the β cell: the last ten years.

Authors:  Frances M Ashcroft; Patrik Rorsman
Journal:  Cell       Date:  2012-03-16       Impact factor: 41.582

8.  Pancreas++: automated quantification of pancreatic islet cells in microscopy images.

Authors:  Hongyu Chen; Bronwen Martin; Huan Cai; Jennifer L Fiori; Josephine M Egan; Sana Siddiqui; Stuart Maudsley
Journal:  Front Physiol       Date:  2013-01-03       Impact factor: 4.566

9.  A general system for automatic biomedical image segmentation using intensity neighborhoods.

Authors:  Cheng Chen; John A Ozolek; Wei Wang; Gustavo K Rohde
Journal:  Int J Biomed Imaging       Date:  2011-06-23

Review 10.  Pathology imaging informatics for quantitative analysis of whole-slide images.

Authors:  Sonal Kothari; John H Phan; Todd H Stokes; May D Wang
Journal:  J Am Med Inform Assoc       Date:  2013-08-19       Impact factor: 4.497

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  1 in total

1.  Machine Learning Algorithms, Applied to Intact Islets of Langerhans, Demonstrate Significantly Enhanced Insulin Staining at the Capillary Interface of Human Pancreatic β Cells.

Authors:  Louise Cottle; Ian Gilroy; Kylie Deng; Thomas Loudovaris; Helen E Thomas; Anthony J Gill; Jaswinder S Samra; Melkam A Kebede; Jinman Kim; Peter Thorn
Journal:  Metabolites       Date:  2021-06-07
  1 in total

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