Literature DB >> 24154808

Two-Point Correlation as a Feature for Histology Images: Feature Space Structure and Correlation Updating.

Lee Cooper1, Joel Saltz, Raghu Machiraju, Kun Huang.   

Abstract

The segmentation of tissues in whole-slide histology images is a necessary step for the morphological analyses of tissues and cellular structures. Previous works have demonstrated the potential of two-point correlation functions (TPCF) as features for tissue segmentation, however the feature space is not yet well understood and computational methods are lacking. This paper illustrates several fundamental aspects of TPCF feature space and contributes a fast algorithm for deterministic feature computation. Despite the high-dimensionality of TPCF feature space, the features corresponding to different tissues are shown to be characterized by low-dimensional manifolds. The relationship between TPCF and the familiar co-occurrence matrix is highlighted, and it is shown that costly cross correlations are not necessary to achieve an accurate segmentation. For computation, the method of correlation updating, based on the linearity of the correlation operator, is proposed and shown to achieve up to a 67X speedup over frequency domain computation methods. Segmentation results are demonstrated on multiple tissues and natural texture images.

Entities:  

Year:  2010        PMID: 24154808      PMCID: PMC3803159          DOI: 10.1109/CVPRW.2010.5543453

Source DB:  PubMed          Journal:  Conf Comput Vis Pattern Recognit Workshops        ISSN: 2160-7508


  5 in total

1.  Rb is critical in a mammalian tissue stem cell population.

Authors:  Pamela L Wenzel; Lizhao Wu; Alain de Bruin; Jean-Leon Chong; Wen-Yi Chen; Geoffrey Dureska; Emily Sites; Tony Pan; Ashish Sharma; Kun Huang; Randall Ridgway; Kishore Mosaliganti; Richard Sharp; Raghu Machiraju; Joel Saltz; Hideyuki Yamamoto; James C Cross; Michael L Robinson; Gustavo Leone
Journal:  Genes Dev       Date:  2007-01-01       Impact factor: 11.361

2.  Modeling heterogeneous materials via two-point correlation functions: basic principles.

Authors:  Y Jiao; F H Stillinger; S Torquato
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-09-11

3.  Segmentation of multivariate mixed data via Lossy data coding and compression.

Authors:  Yi Ma; Harm Derksen; Wei Hong
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2007-09       Impact factor: 6.226

4.  Modeling heterogeneous materials via two-point correlation functions. II. Algorithmic details and applications.

Authors:  Y Jiao; F H Stillinger; S Torquato
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2008-03-27

5.  Tensor classification of N-point correlation function features for histology tissue segmentation.

Authors:  Kishore Mosaliganti; Firdaus Janoos; Okan Irfanoglu; Randall Ridgway; Raghu Machiraju; Kun Huang; Joel Saltz; Gustavo Leone; Michael Ostrowski
Journal:  Med Image Anal       Date:  2008-07-25       Impact factor: 8.545

  5 in total
  3 in total

1.  Digital Pathology: Data-Intensive Frontier in Medical Imaging: Health-information sharing, specifically of digital pathology, is the subject of this paper which discusses how sharing the rich images in pathology can stretch the capabilities of all otherwise well-practiced disciplines.

Authors:  Lee A D Cooper; Alexis B Carter; Alton B Farris; Fusheng Wang; Jun Kong; David A Gutman; Patrick Widener; Tony C Pan; Sharath R Cholleti; Ashish Sharma; Tahsin M Kurc; Daniel J Brat; Joel H Saltz
Journal:  Proc IEEE Inst Electr Electron Eng       Date:  2012-04       Impact factor: 10.961

Review 2.  Novel genotype-phenotype associations in human cancers enabled by advanced molecular platforms and computational analysis of whole slide images.

Authors:  Lee A D Cooper; Jun Kong; David A Gutman; William D Dunn; Michael Nalisnik; Daniel J Brat
Journal:  Lab Invest       Date:  2015-01-19       Impact factor: 5.662

3.  Modeling clustered activity increase in amyloid-beta positron emission tomographic images with statistical descriptors.

Authors:  Sepideh Shokouhi; Baxter P Rogers; Hakmook Kang; Zhaohua Ding; Daniel O Claassen; John W Mckay; William R Riddle
Journal:  Clin Interv Aging       Date:  2015-04-20       Impact factor: 4.458

  3 in total

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