Literature DB >> 18757532

Box C/D RNA-guided 2'-O methylations and the intron of tRNATrp are not essential for the viability of Haloferax volcanii.

Archi Joardar1, Priyatansh Gurha, Geena Skariah, Ramesh Gupta.   

Abstract

Deleting the box C/D RNA-containing intron in the Haloferax volcanii tRNATrp gene abolishes RNA-guided 2'-O methylations of C34 and U39 residues of tRNATrp. However, this deletion does not affect growth under standard conditions.

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Year:  2008        PMID： 18757532      PMCID： PMC2580716          DOI： 10.1128/JB.00820-08

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  29 in total

Review 1.  Intron-dependent enzymatic formation of modified nucleosides in eukaryotic tRNAs: a review.

Authors:  H Grosjean; Z Szweykowska-Kulinska; Y Motorin; F Fasiolo; G Simos
Journal:  Biochimie       Date:  1997-05       Impact factor: 4.079

Review 2.  Small non-coding RNAs in Archaea.

Authors:  Patrick P Dennis; Arina Omer
Journal:  Curr Opin Microbiol       Date:  2005-10-26       Impact factor: 7.934

3.  Determination of tryptophan tRNA recognition sites for tryptophanyl-tRNA synthetase from hyperthermophilic archaeon, Aeropyrum pernix K1.

Authors:  Wataru Tsuchiya; Takuya Umehara; Atsushi Kuno; Tsunemi Hasegawa
Journal:  Nucleic Acids Symp Ser (Oxf)       Date:  2004

Review 4.  Summary: the modified nucleosides of RNA.

Authors:  P A Limbach; P F Crain; J A McCloskey
Journal:  Nucleic Acids Res       Date:  1994-06-25       Impact factor: 16.971

5.  A computational screen for methylation guide snoRNAs in yeast.

Authors:  T M Lowe; S R Eddy
Journal:  Science       Date:  1999-02-19       Impact factor: 47.728

6.  Sequential 2'-O-methylation of archaeal pre-tRNATrp nucleotides is guided by the intron-encoded but trans-acting box C/D ribonucleoprotein of pre-tRNA.

Authors:  Sanjay K Singh; Priyatansh Gurha; Elizabeth J Tran; E Stuart Maxwell; Ramesh Gupta
Journal:  J Biol Chem       Date:  2004-09-03       Impact factor: 5.157

7.  Anticodon bases C34 and C35 are major, positive, identity elements in Saccharomyces cerevisiae tRNA(Trp).

Authors:  K D Yesland; J D Johnson
Journal:  Nucleic Acids Res       Date:  1993-11-11       Impact factor: 16.971

8.  Regulated polyploidy in halophilic archaea.

Authors:  Sebastian Breuert; Thorsten Allers; Gabi Spohn; Jörg Soppa
Journal:  PLoS One       Date:  2006-12-20       Impact factor: 3.240

9.  Identification of human tRNA:m5C methyltransferase catalysing intron-dependent m5C formation in the first position of the anticodon of the pre-tRNA Leu (CAA).

Authors:  Bartosz Brzezicha; Marcin Schmidt; Izabela Makalowska; Artur Jarmolowski; Joanna Pienkowska; Zofia Szweykowska-Kulinska
Journal:  Nucleic Acids Res       Date:  2006-10-27       Impact factor: 16.971

Review 10.  The structure and function of small nucleolar ribonucleoproteins.

Authors:  Steve L Reichow; Tomoko Hamma; Adrian R Ferré-D'Amaré; Gabriele Varani
Journal:  Nucleic Acids Res       Date:  2007-02-06       Impact factor: 16.971
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  9 in total

1.  The archaeal COG1901/DUF358 SPOUT-methyltransferase members, together with pseudouridine synthase Pus10, catalyze the formation of 1-methylpseudouridine at position 54 of tRNA.

Authors:  Kunal Chatterjee; Ian K Blaby; Patrick C Thiaville; Mrinmoyee Majumder; Henri Grosjean; Y Adam Yuan; Ramesh Gupta; Valérie de Crécy-Lagard
Journal:  RNA       Date:  2012-01-24       Impact factor: 4.942

2.  Multiple information carried by RNAs: total eclipse or a light at the end of the tunnel?

Authors:  Baptiste Bogard; Claire Francastel; Florent Hubé
Journal:  RNA Biol       Date:  2020-06-26       Impact factor: 4.652

3.  Pseudouridine formation in archaeal RNAs: The case of Haloferax volcanii.

Authors:  Ian K Blaby; Mrinmoyee Majumder; Kunal Chatterjee; Sujata Jana; Henri Grosjean; Valérie de Crécy-Lagard; Ramesh Gupta
Journal:  RNA       Date:  2011-05-31       Impact factor: 4.942

Review 4.  Structures of ribonucleoprotein particle modification enzymes.

Authors:  Bo Liang; Hong Li
Journal:  Q Rev Biophys       Date:  2010-11-26       Impact factor: 5.318

5.  Processing of multiple-intron-containing pretRNA.

Authors:  Giuseppe D Tocchini-Valentini; Paolo Fruscoloni; Glauco P Tocchini-Valentini
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-12       Impact factor: 11.205

6.  Contribution of protein Gar1 to the RNA-guided and RNA-independent rRNA:Ψ-synthase activities of the archaeal Cbf5 protein.

Authors:  Ryosuke Fujikane; Isabelle Behm-Ansmant; Anne-Sophie Tillault; Christine Loegler; Valérie Igel-Bourguignon; Evelyne Marguet; Patrick Forterre; Christiane Branlant; Yuri Motorin; Bruno Charpentier
Journal:  Sci Rep       Date:  2018-09-14       Impact factor: 4.379

7.  Impact of intron removal from tRNA genes on Saccharomyces cerevisiae.

Authors:  Sachiko Hayashi; Shunsuke Mori; Takeo Suzuki; Tsutomu Suzuki; Tohru Yoshihisa
Journal:  Nucleic Acids Res       Date:  2019-06-20       Impact factor: 16.971

8.  Splicing Endonuclease Is an Important Player in rRNA and tRNA Maturation in Archaea.

Authors:  Thandi S Schwarz; Sarah J Berkemer; Stephan H Bernhart; Matthias Weiß; Sébastien Ferreira-Cerca; Peter F Stadler; Anita Marchfelder
Journal:  Front Microbiol       Date:  2020-11-20       Impact factor: 5.640

Review 9.  Handling tRNA introns, archaeal way and eukaryotic way.

Authors:  Tohru Yoshihisa
Journal:  Front Genet       Date:  2014-07-10       Impact factor: 4.599
  9 in total

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